mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.18
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 2,228,922 | 1 | .→G | 100.0% | 7.9 | 2 | coding (82/228 nt) | is57 | transposase |
| * | NC_013198 | 2,565,109 | 0 | G→T | 100.0% | 6.4 | 2 | noncoding (115/116 nt) | 5S rRNA | 5S ribosomal RNA |
| * | NC_013198 | 2,565,121 | 0 | C→T | 100.0% | 5.3 | 2 | noncoding (103/116 nt) | 5S rRNA | 5S ribosomal RNA |
| * | NC_013198 | 2,565,125 | 0 | C→A | 100.0% | 5.5 | 2 | noncoding (99/116 nt) | 5S rRNA | 5S ribosomal RNA |
| * | NC_013198 | 2,237,048 | 0 | T→G | 100.0% | 4.7 | 2 | V30G (GTT→GGT) | is60 | transposase IS5 family protein |
| * | NC_013198 | 24,681 | 0 | G→T | 100.0% | 3.8 | 2 | L132F (TTG→TTT) | is3 | transposase IS5 family protein |
| * | NC_013198 | 508,688 | 0 | T→G | 100.0% | 3.4 | 2 | H107P (CAC→CCC) | is27 | transposase IS5 family protein |
| * | NC_013198 | 508,715 | 0 | G→T | 100.0% | 2.0 | 2 | T98N (ACC→AAC) | is27 | transposase IS5 family protein |
| * | NC_013198 | 2,160,163 | 0 | T→A | 100.0% | 2.3 | 2 | F510M (TTT→ATT) | LGG_02095 | type II restriction enzyme methylase subunit |
| * | NC_013198 | 309,442 | 0 | G→T | 100.0% | 1.9 | 2 | T25K (ACA→AAA) | LGG_00305 | hypothetical protein |
| * | NC_013198 | 466,865 | 0 | C→A | 100.0% | 1.9 | 2 | G18V (GGC→GTC) | is22 | transposase IS4 family protein |
| * | NC_013198 | 466,878 | 0 | T→G | 100.0% | 1.9 | 2 | T14P (ACG→CCG) | is22 | transposase IS4 family protein |
| * | NC_013198 | 466,890 | 0 | T→G | 100.0% | 1.9 | 2 | T10P (ACC→CCC) | is22 | transposase IS4 family protein |
| * | NC_013198 | 2,237,063 | 0 | T→G | 100.0% | 1.8 | 2 | L35W (TTG→TGG) | is60 | transposase IS5 family protein |
| * | NC_013198 | 2,565,117 | 0 | G→C | 100.0% | 1.9 | 2 | noncoding (107/116 nt) | 5S rRNA | 5S ribosomal RNA |
| Marginal new junction evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | 1998841 = | 2974 (5.698) | 8 (0.016) | 24/192 | 3.1 | intergenic (+434/‑243) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998844 | 3000 (5.748) | intergenic (+437/‑240) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | = 833345 | 590 (1.256) | 86 (0.183) | 19/180 | 3.4 | coding (934/1584 nt) | ybeC | amino acid permease |
| ? | NC_013198 | 833418 = | 576 (1.104) | coding (1007/1584 nt) | ybeC | amino acid permease | ||||
| * | ? | NC_013198 | = 2649643 | 256 (0.564) | 38 (0.084) | 18/174 | 3.4 | intergenic (‑153/+86) | pepIP/LGG_02588 | proline iminopeptidase/hypothetical protein |
| ? | NC_013198 | 2649766 = | 216 (0.414) | coding (116/153 nt) | LGG_02588 | hypothetical protein | ||||
| * | ? | NC_013198 | 2649753 = | 228 (0.502) | 38 (0.084) | 18/174 | 3.4 | coding (129/153 nt) | LGG_02588 | hypothetical protein |
| ? | NC_013198 | = 2649855 | 268 (0.513) | coding (27/153 nt) | LGG_02588 | hypothetical protein | ||||
| * | ? | NC_013198 | 20531 = | NA (NA) | 98 (0.196) | 16/192 | 3.9 | coding (1393/1416 nt) | is2 | transposase IS5 family protein |
| ? | NC_013198 | 599644 = | NA (NA) | coding (1321/1416 nt) | is32 | transposase IS5 family protein | ||||
| * | ? | NC_013198 | 1998770 = | 336 (0.644) | 50 (0.096) | 16/200 | 4.0 | intergenic (+363/‑314) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998910 | 1266 (2.426) | intergenic (+503/‑174) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | = 158644 | NA (NA) | 32 (0.064) | 15/192 | 4.0 | intergenic (‑118/‑127) | LGG_00143/is4 | hypothetical protein/transposase |
| ? | NC_013198 | = 939338 | 530 (1.015) | intergenic (+655/‑151) | tRNA‑Arg/cggR | tRNA‑Arg/central glycolytic genes regulator | ||||
| * | ? | NC_013198 | = 223525 | 1520 (3.066) | 64 (0.129) | 14/190 | 4.1 | intergenic (‑96/‑32) | LGG_00209/rrg | ABC transporter ATPase/permease/XRE family transcriptional regulator |
| ? | NC_013198 | = 223578 | 1106 (2.119) | coding (22/906 nt) | rrg | XRE family transcriptional regulator | ||||
| * | ? | NC_013198 | = 201395 | 260 (0.573) | 24 (0.053) | 13/174 | 4.1 | intergenic (+370/‑150) | LGG_00189/ackA | recombination factor protein RarA/acetate kinase |
| ? | NC_013198 | 201518 = | 526 (1.008) | intergenic (+493/‑27) | LGG_00189/ackA | recombination factor protein RarA/acetate kinase | ||||
| * | ? | NC_013198 | = 2070645 | 644 (1.356) | 36 (0.076) | 13/182 | 4.2 | coding (1000/2412 nt) | glgP | glycogen/starch/alpha‑glucan phosphorylase |
| ? | NC_013198 | 2070762 = | 366 (0.701) | coding (883/2412 nt) | glgP | glycogen/starch/alpha‑glucan phosphorylase | ||||