mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.18
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| read file | reads | bases | longest | |
|---|---|---|---|---|
| errors | 02_1_00 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_01 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_02 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_03 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_04 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_05 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_06 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_07 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_08 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_09 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_10 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_11 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_12 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_13 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_14 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_1_15 | 15,275 | 1,542,775 | 101 bases |
| errors | 02_3_00 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_01 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_02 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_03 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_04 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_05 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_06 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_07 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_08 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_09 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_10 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_11 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_12 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_13 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_14 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 02_3_15 | 15,275 | 1,542,775 | 101 bases |
| total | 37,530,550 | 3,790,585,550 | 101 bases |
| seq id | length | coverage | nbinom mean | nbinom size | description | ||
|---|---|---|---|---|---|---|---|
| coverage | distribution | NC_013198 | 3,010,111 | 521.9 | 497.7 | 6.0 | Lactobacillus rhamnosus GG, complete genome. |
| total | 3,010,111 |
| reference sequence | read start probability |
|---|---|
| NC_013198 | 0.42326 |
| step | start | end | elapsed |
|---|---|---|---|
| Read and reference sequence file input | 08:42:22 17 Aug 2012 | 08:57:44 17 Aug 2012 | 15 minutes 22 seconds |
| Read alignment to reference genome | 08:57:44 17 Aug 2012 | 16:34:03 17 Aug 2012 | 7 hours 36 minutes 19 seconds |
| Preprocessing alignments for candidate junction identification | 16:34:03 17 Aug 2012 | 16:56:23 17 Aug 2012 | 22 minutes 20 seconds |
| Preliminary analysis of coverage distribution | 16:56:23 17 Aug 2012 | 17:13:51 17 Aug 2012 | 17 minutes 28 seconds |
| Identifying candidate junctions | 17:13:51 17 Aug 2012 | 17:17:46 17 Aug 2012 | 3 minutes 55 seconds |
| Candidate junction alignment | 17:17:46 17 Aug 2012 | 19:23:48 17 Aug 2012 | 2 hours 6 minutes 2 seconds |
| Resolving alignments with candidate junctions | 19:23:48 17 Aug 2012 | 19:43:19 17 Aug 2012 | 19 minutes 31 seconds |
| Creating BAM files | 19:43:19 17 Aug 2012 | 19:57:39 17 Aug 2012 | 14 minutes 20 seconds |
| Tabulating error counts | 19:57:39 17 Aug 2012 | 20:03:54 17 Aug 2012 | 6 minutes 15 seconds |
| Re-calibrating base error rates | 20:03:54 17 Aug 2012 | 20:04:13 17 Aug 2012 | 19 seconds |
| Read alignment mutations | 20:04:13 17 Aug 2012 | 20:50:12 17 Aug 2012 | 45 minutes 59 seconds |
| Output | 20:50:12 17 Aug 2012 | 20:52:42 17 Aug 2012 | 2 minutes 30 seconds |
| Total | 12 hours 10 minutes 20 seconds | ||
