mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.18
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 308,347 | 0 | A→. | 100.0% | 9.1 | 2 | noncoding (592/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 1,873,195 | 0 | T→C | 100.0% | 9.6 | 2 | T204A (ACC→GCC) | LGG_01843 | hypothetical protein |
| * | NC_013198 | 1,873,210 | 0 | T→C | 100.0% | 8.4 | 4 | S199G (AGC→GGC) | LGG_01843 | hypothetical protein |
| * | NC_013198 | 2,568,141 | 0 | A→. | 100.0% | 8.7 | 2 | noncoding (117/2916 nt) | 23S rRNA | 23S ribosomal RNA |
| * | NC_013198 | 308,410 | 1 | .→C | 100.0% | 7.5 | 4 | noncoding (655/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 2,568,138 | 0 | C→A | 100.0% | 7.1 | 2 | noncoding (120/2916 nt) | 23S rRNA | 23S ribosomal RNA |
| * | NC_013198 | 508,608 | 1 | .→C | 100.0% | 5.2 | 2 | coding (400/1419 nt) | is27 | transposase IS5 family protein |
| * | NC_013198 | 2,568,119 | 0 | C→A | 100.0% | 5.0 | 2 | noncoding (139/2916 nt) | 23S rRNA | 23S ribosomal RNA |
| * | NC_013198 | 1,873,107 | 0 | A→C | 100.0% | 4.2 | 12 | L233R (CTG→CGG) | LGG_01843 | hypothetical protein |
| * | NC_013198 | 2,568,110 | 0 | G→T | 100.0% | 4.7 | 2 | noncoding (148/2916 nt) | 23S rRNA | 23S ribosomal RNA |
| * | NC_013198 | 526,305 | 0 | C→A | 100.0% | 3.3 | 2 | G16* (GGA→TGA) | is29 | transposase IS5 family protein |
| * | NC_013198 | 526,314 | 0 | C→A | 100.0% | 3.0 | 2 | E13* (GAA→TAA) | is29 | transposase IS5 family protein |
| * | NC_013198 | 2,163,440 | 0 | A→T | 100.0% | 3.9 | 2 | F696L (TTT→TTA) | LGG_02097 | type II restriction enzyme methyltransferase |
| * | NC_013198 | 1,535,301 | 0 | T→G | 100.0% | 2.4 | 2 | V476V (GTA→GTC) | LGG_01523 | phage‑related tail‑host specificity protein |
| * | NC_013198 | 2,163,437 | 0 | G→T | 100.0% | 2.1 | 2 | N697K (AAC→AAA) | LGG_02097 | type II restriction enzyme methyltransferase |
| * | NC_013198 | 2,568,133 | 0 | G→T | 100.0% | 2.9 | 2 | noncoding (125/2916 nt) | 23S rRNA | 23S ribosomal RNA |
| * | NC_013198 | 2,762,659 | 0 | A→C | 100.0% | 2.3 | 2 | M110M (TTG→GTG) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 508,609 | 0 | G→T | 100.0% | 1.5 | 2 | R133R (CGC→CGA) | is27 | transposase IS5 family protein |
| * | NC_013198 | 508,793 | 0 | G→T | 100.0% | 1.9 | 2 | A72E (GCA→GAA) | is27 | transposase IS5 family protein |
| * | NC_013198 | 526,285 | 0 | C→G | 100.0% | 1.7 | 2 | P22P (CCG→CCC) | is29 | transposase IS5 family protein |
| * | NC_013198 | 526,346 | 0 | A→C | 100.0% | 1.8 | 2 | V2G (GTT→GGT) | is29 | transposase IS5 family protein |
| * | NC_013198 | 2,568,129 | 1 | .→G | 100.0% | 1.9 | 2 | noncoding (129/2916 nt) | 23S rRNA | 23S ribosomal RNA |
| Marginal new junction evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | = 1873983 | 618 (1.073) | 48 (0.083) | 23/184 | 8.5 | coding (79/177 nt) | LGG_01844 | hypothetical protein |
| ? | NC_013198 | = 2898109 | 904 (1.445) | coding (219/237 nt) | LGG_02835 | hypothetical protein | ||||
| * | ? | NC_013198 | 1998770 = | 334 (0.550) | 48 (0.079) | 20/194 | 9.6 | intergenic (+363/‑314) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998901 | 1182 (1.889) | intergenic (+494/‑183) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | 1998841 = | 1934 (3.091) | 10 (0.017) | 16/192 | 10.6 | intergenic (+434/‑243) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998844 | 1952 (3.119) | intergenic (+437/‑240) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | = 1539601 | 546 (0.969) | 32 (0.057) | 13/180 | 11.1 | coding (3358/4167 nt) | LGG_01525 | phage‑related minor tail protein |
| ? | NC_013198 | 1539722 = | 486 (0.777) | coding (3237/4167 nt) | LGG_01525 | phage‑related minor tail protein | ||||
| * | ? | NC_013198 | 2682710 = | 1372 (2.260) | 52 (0.086) | 12/194 | 12.0 | coding (161/765 nt) | nodJ | ABC transporter permease |
| ? | NC_013198 | 2682779 = | 1480 (2.365) | coding (92/765 nt) | nodJ | ABC transporter permease | ||||
| * | ? | NC_013198 | 1998770 = | 334 (0.556) | 34 (0.057) | 12/192 | 11.9 | intergenic (+363/‑314) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998886 | 1450 (2.317) | intergenic (+479/‑198) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | = 2145417 | 922 (1.503) | 52 (0.085) | 11/196 | 12.4 | intergenic (‑47/+906) | LGG_02087/hyuA | N‑acetylmuramoyl‑L‑alanine amidase/hydantoinase/oxoprolinase |
| ? | NC_013198 | = 2145488 | 1104 (1.764) | intergenic (‑118/+835) | LGG_02087/hyuA | N‑acetylmuramoyl‑L‑alanine amidase/hydantoinase/oxoprolinase | ||||
| * | ? | NC_013198 | = 540066 | 512 (0.899) | 34 (0.060) | 11/182 | 11.9 | coding (96/366 nt) | radC | hypothetical protein |
| ? | NC_013198 | = 540132 | 794 (1.269) | coding (162/366 nt) | radC | hypothetical protein | ||||
| * | ? | NC_013198 | 2388435 = | 636 (1.070) | 30 (0.050) | 11/190 | 12.2 | coding (781/792 nt) | LGG_02313 | metallophosphoesterase |
| ? | NC_013198 | 2388514 = | 964 (1.540) | intergenic (+68/+186) | LGG_02313/LGG_02314 | metallophosphoesterase/hypothetical protein | ||||
| * | ? | NC_013198 | 21939 = | NA (NA) | 26 (0.046) | 11/180 | 11.8 | intergenic (‑16/‑181) | is2/LGG_00023 | transposase IS5 family protein/metal‑dependent membrane protease |
| ? | NC_013198 | 21999 = | 226 (0.361) | intergenic (‑76/‑121) | is2/LGG_00023 | transposase IS5 family protein/metal‑dependent membrane protease | ||||