mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.18
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| read file | reads | bases | longest | |
|---|---|---|---|---|
| errors | 05_1_00 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_01 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_02 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_03 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_04 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_05 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_06 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_07 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_08 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_09 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_10 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_11 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_12 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_13 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_1_14 | 183,726 | 18,556,326 | 101 bases |
| errors | 05_3_00 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_01 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_02 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_03 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_04 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_05 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_06 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_07 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_08 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_09 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_10 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_11 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_12 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_13 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 05_3_14 | 183,726 | 18,556,326 | 101 bases |
| total | 35,367,452 | 3,572,112,652 | 101 bases |
| seq id | length | coverage | nbinom mean | nbinom size | description | ||
|---|---|---|---|---|---|---|---|
| coverage | distribution | NC_013198 | 3,010,111 | 625.8 | 622.8 | 19.9 | Lactobacillus rhamnosus GG, complete genome. |
| total | 3,010,111 |
| reference sequence | read start probability |
|---|---|
| NC_013198 | 0.35840 |
| step | start | end | elapsed |
|---|---|---|---|
| Read and reference sequence file input | 20:50:37 18 Aug 2012 | 21:05:02 18 Aug 2012 | 14 minutes 25 seconds |
| Read alignment to reference genome | 21:05:02 18 Aug 2012 | 03:34:12 19 Aug 2012 | 6 hours 29 minutes 10 seconds |
| Preprocessing alignments for candidate junction identification | 03:34:12 19 Aug 2012 | 03:53:49 19 Aug 2012 | 19 minutes 37 seconds |
| Preliminary analysis of coverage distribution | 03:53:49 19 Aug 2012 | 04:15:01 19 Aug 2012 | 21 minutes 12 seconds |
| Identifying candidate junctions | 04:15:01 19 Aug 2012 | 04:17:52 19 Aug 2012 | 2 minutes 51 seconds |
| Candidate junction alignment | 04:17:52 19 Aug 2012 | 06:16:34 19 Aug 2012 | 1 hour 58 minutes 42 seconds |
| Resolving alignments with candidate junctions | 06:16:34 19 Aug 2012 | 06:37:03 19 Aug 2012 | 20 minutes 29 seconds |
| Creating BAM files | 06:37:03 19 Aug 2012 | 06:54:44 19 Aug 2012 | 17 minutes 41 seconds |
| Tabulating error counts | 06:54:44 19 Aug 2012 | 07:02:26 19 Aug 2012 | 7 minutes 42 seconds |
| Re-calibrating base error rates | 07:02:26 19 Aug 2012 | 07:02:47 19 Aug 2012 | 21 seconds |
| Read alignment mutations | 07:02:47 19 Aug 2012 | 07:59:54 19 Aug 2012 | 57 minutes 7 seconds |
| Output | 07:59:54 19 Aug 2012 | 08:02:34 19 Aug 2012 | 2 minutes 40 seconds |
| Total | 11 hours 11 minutes 57 seconds | ||
