Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0131981,873,2100T→C100.0% 8.4 4S199G (AGC→GGC) LGG_01843hypothetical protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/4):  ref base (0/0):  total (0/4)

GCGCTCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGATCGCGTTTCAGAGCGTGAACCGGCGCGTTCAGAAGTCGGAGTGTAAGTGGCCTCAGACGTGAT  >  NC_013198/1873206‑1873307
    |                                                                                                 
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt  <  17:708253/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt  <  18:273237/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt  <  24:609387/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt  <  2:708253/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt  <  3:273237/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt  <  9:609387/101‑1
    |                                                                                                 
GCGCTCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGATCGCGTTTCAGAGCGTGAACCGGCGCGTTCAGAAGTCGGAGTGTAAGTGGCCTCAGACGTGAT  >  NC_013198/1873206‑1873307

Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG