mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.18
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 596,201 | 1 | .→C | 100.0% | 9.1 | 2 | intergenic (‑114/+92) | LGG_00589/LGG_00590 | hypothetical protein/hypothetical protein |
| * | NC_013198 | 1,873,195 | 0 | T→C | 100.0% | 9.4 | 2 | T204A (ACC→GCC) | LGG_01843 | hypothetical protein |
| * | NC_013198 | 1,873,107 | 0 | A→C | 100.0% | 6.5 | 8 | L233R (CTG→CGG) | LGG_01843 | hypothetical protein |
| * | NC_013198 | 1,873,119 | 0 | C→T | 100.0% | 6.1 | 10 | R229Q (CGG→CAG) | LGG_01843 | hypothetical protein |
| * | NC_013198 | 594,686 | 0 | A→C | 100.0% | 4.9 | 2 | *468E (TAA→GAA) | LGG_00589 | hypothetical protein |
| * | NC_013198 | 594,692 | 0 | G→C | 100.0% | 3.9 | 2 | Q466E (CAG→GAG) | LGG_00589 | hypothetical protein |
| * | NC_013198 | 508,635 | 0 | G→T | 100.0% | 2.9 | 2 | R125R (CGA→AGA) | is27 | transposase IS5 family protein |
| * | NC_013198 | 594,644 | 0 | G→C | 100.0% | 2.0 | 2 | intergenic (‑126/+40) | yicL/LGG_00589 | carboxylate/amino acid/amine transporter/hypothetical protein |
| * | NC_013198 | 1,873,112 | 0 | T→C | 100.0% | 2.3 | 8 | R231R (AGA→AGG) | LGG_01843 | hypothetical protein |
| * | NC_013198 | 1,873,116 | 0 | C→G | 100.0% | 2.8 | 10 | R230P (CGC→CCC) | LGG_01843 | hypothetical protein |
| * | NC_013198 | 1,873,111 | 0 | T→C | 100.0% | 1.9 | 8 | S232G (AGT→GGT) | LGG_01843 | hypothetical protein |
| * | NC_013198 | 1,873,879 | 0 | T→C | 100.0% | 1.0 | 4 | intergenic (‑75/‑26) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| * | NC_013198 | 1,873,109 | 0 | A→G | 100.0% | 0.9 | 8 | S232S (AGT→AGC) | LGG_01843 | hypothetical protein |
| Marginal new junction evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | = 459722 | 612 (0.866) | 68 (0.096) | 22/180 | 7.7 | coding (211/849 nt) | is19 | transposase IS150/IS3 family protein |
| ? | NC_013198 | 459825 = | NA (NA) | coding (108/849 nt) | is19 | transposase IS150/IS3 family protein | ||||
| * | ? | NC_013198 | = 2649643 | 802 (1.173) | 56 (0.082) | 22/174 | 7.5 | intergenic (‑153/+86) | pepIP/LGG_02588 | proline iminopeptidase/hypothetical protein |
| ? | NC_013198 | 2649766 = | 726 (0.924) | coding (116/153 nt) | LGG_02588 | hypothetical protein | ||||
| * | ? | NC_013198 | 2649753 = | 804 (1.176) | 44 (0.064) | 18/174 | 8.3 | coding (129/153 nt) | LGG_02588 | hypothetical protein |
| ? | NC_013198 | = 2649855 | 756 (0.962) | coding (27/153 nt) | LGG_02588 | hypothetical protein | ||||
| * | ? | NC_013198 | = 1873983 | 584 (0.808) | 46 (0.064) | 18/184 | 8.6 | coding (79/177 nt) | LGG_01844 | hypothetical protein |
| ? | NC_013198 | = 2898109 | 1322 (1.683) | coding (219/237 nt) | LGG_02835 | hypothetical protein | ||||
| * | ? | NC_013198 | = 2960030 | 2986 (4.271) | 62 (0.089) | 16/178 | 8.9 | coding (382/1560 nt) | LGG_02901 | phage‑related prohead protease |
| ? | NC_013198 | 2960196 = | 3856 (4.909) | coding (548/1560 nt) | LGG_02901 | phage‑related prohead protease | ||||
| * | ? | NC_013198 | 1998841 = | 2252 (2.867) | 36 (0.048) | 15/192 | 9.5 | intergenic (+434/‑243) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998844 | 2296 (2.923) | intergenic (+437/‑240) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | 201277 = | 558 (0.717) | 70 (0.094) | 13/190 | 10.0 | intergenic (+252/‑268) | LGG_00189/ackA | recombination factor protein RarA/acetate kinase |
| ? | NC_013198 | = 1055486 | 1050 (1.337) | intergenic (+85/+49) | LGG_01041/LGG_01042 | hypothetical protein/hypothetical protein | ||||
| * | ? | NC_013198 | 1998770 = | 432 (0.567) | 30 (0.039) | 12/194 | 10.4 | intergenic (+363/‑314) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998901 | 2278 (2.900) | intergenic (+494/‑183) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | 1998770 = | 432 (0.573) | 28 (0.037) | 12/192 | 10.3 | intergenic (+363/‑314) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998886 | 2430 (3.093) | intergenic (+479/‑198) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | = 479236 | 1042 (1.442) | 26 (0.036) | 11/184 | 10.4 | coding (2042/2979 nt) | ebgA | cryptic beta‑D‑galactosidase subunit alpha |
| ? | NC_013198 | 479366 = | 732 (0.932) | coding (2172/2979 nt) | ebgA | cryptic beta‑D‑galactosidase subunit alpha | ||||