Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_013198	1,038,046	Δ860 bp		[LGG_01023]–is36	[LGG_01023], is35, is36

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_013198	1038046–1038901	1038905	5–860	66 [0]	[0] 66	[LGG_01023]–is36	[LGG_01023], is35, is36

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 1038045	0 (0.000)	64 (0.745)	39/290	0.4	coding (872/978 nt)	LGG_01023	adenine specific DNA methylase Mod
	?	NC_013198	1038906 =	0 (0.000)				intergenic (+13/‑238)	is36/LGG_01026	transposase IS4 family protein/type III restriction‑modification system methylation subunit
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AACGATGGATCGTTGAACGTTCATGGAGTTGGCTAGACAAATGTCGGCGACTTTGGAAAAACTGTGAACGTGCCCTTAACAGCAGTCTTCAAATGGTTGTATTGGCCTTCCTGAAGATAGTTCTTAAAAGATACTAGACAGGTTCTAAGGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAATCATCAGAAA  .  NC_013198/1038757‑1039055                                                                                                                                                      |                                                                                                                                                      aaccatacattggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaaggg                                                                                                                                                      <  1:1242412‑M2/2‑1  accatacattggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGc                                                                                                                                                     >  1:47680‑M2/149‑151  accatacattggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGc                                                                                                                                                     >  1:465228‑M2/149‑151  accatacattggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGc                                                                                                                                                     >  1:419718‑M2/149‑151     atacattggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAAc                                                                                                                                                  >  1:371019‑M2/146‑151       acattggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACAt                                                                                                                                                >  1:125114‑M2/144‑151       acattggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACAt                                                                                                                                                <  2:465239‑M2/8‑1            ggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTCCGa                                                                                                                                           >  1:864556‑M2/139‑151            ggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGa                                                                                                                                           <  2:1078971‑M2/13‑1            ggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGa                                                                                                                                           >  1:1079339‑M2/139‑151            ggcttatgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGa                                                                                                                                           >  2:929166‑M2/139‑151                 atgctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataa                                                                                                                                      >  2:218262‑M2/134‑151                    ctaagaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAatat                                                                                                                                   <  1:190653‑M2/21‑1                       agaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaactactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTAc                                                                                                                                <  2:1151721‑M2/24‑1                        gaacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACt                                                                                                                               >  2:908581‑M2/127‑151                         aacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTg                                                                                                                              <  2:638563‑M2/26‑1                         aacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTg                                                                                                                              <  1:285930‑M2/26‑1                         aacataaataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGAAACATAACGATCTATAATTACTg                                                                                                                              >  2:1129083‑M2/126‑151                               aataaattgaacccgttctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCa                                                                                                                        >  2:263374‑M2/120‑151                                                ctttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCAttttt                                                                                                       >  2:901080‑M2/103‑151                                                              catcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCAACCTAAAAATgg                                                                                         >  2:835224‑M2/89‑151                                                                     ggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGgaga                                                                                  >  1:1086399‑M2/82‑151                                                                     ggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGgaga                                                                                  >  1:970138‑M2/82‑151                                                                       ataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATg                                                                                >  2:322528‑M2/80‑151                                                                         aatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGt                                                                              >  1:984986‑M2/78‑151                                                                          atataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTc                                                                             >  2:105210‑M2/77‑151                                                                          atataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTc                                                                             >  1:408974‑M2/77‑151                                                                              aaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTaaa                                                                         >  1:1032727‑M2/73‑151                                                                              aaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTaaa                                                                         >  2:524372‑M2/73‑151                                                                                actattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGa                                                                       <  1:322519‑M2/81‑1                                                                                 ctattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGAt                                                                      >  1:345674‑M2/70‑151                                                                                 ctattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGAt                                                                      >  2:1221787‑M2/70‑151                                                                                   attcaaatccggacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATAc                                                                    >  2:133614‑M2/68‑151                                                                                       aaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAAtt                                                                <  2:408984‑M2/88‑1                                                                                       aaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAAtt                                                                <  1:908897‑M2/88‑1                                                                                        aatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTa                                                               >  2:849344‑M2/63‑151                                                                                             agacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaa                                                          <  2:864239‑M2/94‑1                                                                                                     actcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAaaatcaa                                                  >  2:1160621‑M2/50‑151                                                                                                      ctcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAaaatcaaa                                                 >  1:842150‑M2/49‑151                                                                                                        gacagggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAaaatcaaatc                                               <  1:419708‑M2/105‑1                                                                                                        caaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAaaatcaaatc                                               <  2:352880‑M2/105‑1                                                                                                        caaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAaaatcaaatc                                               >  1:839192‑M2/47‑151                                                                                                             ggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAAtgaaaaaatcaaatcctgtc                                          >  2:419719‑M2/42‑146                                                                                                                gcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAg                                       >  1:846602‑M2/39‑151                                                                                                                  gtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAgtt                                     >  2:1190418‑M2/37‑151                                                                                                                  gtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAgtt                                     >  2:707708‑M2/37‑151                                                                                                                       gagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGtttt                                <  1:915724‑M2/120‑1                                                                                                                       gagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGtttt                                >  1:812207‑M2/32‑151                                                                                                                            ggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGc                           >  1:1025491‑M2/27‑151                                                                                                                               gatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTg                        >  1:314618‑M2/24‑151                                                                                                                                      ggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTc                 <  1:105199‑M2/135‑1                                                                                                                                         gcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTgg              >  1:965562‑M2/14‑151                                                                                                                                         gcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTgg              >  2:253623‑M2/14‑151                                                                                                                                         gcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTgg              >  2:349138‑M2/14‑151                                                                                                                                            caaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAat           <  2:408033‑M2/141‑1                                                                                                                                            agaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAat           <  1:1120901‑M2/141‑1                                                                                                                                              aacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGaatct         >  2:1120534‑M2/9‑150                                                                                                                                              aacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAatca         >  1:1216292‑M2/9‑151                                                                                                                                              aacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAatca         >  1:1209859‑M2/9‑151                                                                                                                                              aacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAatca         >  2:926310‑M2/9‑151                                                                                                                                                cctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGaatcata       >  2:247659‑M2/7‑150                                                                                                                                                cctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAatcatc       >  2:752440‑M2/7‑151                                                                                                                                                cctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAatcatc       >  1:640852‑M2/7‑151                                                                                                                                                cctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATAAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAatcatc       >  2:1163178‑M2/7‑151                                                                                                                                                     gGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAATCATCAGaaa  >  1:53217‑M2/2‑151                                                                                                                                                     gGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAATCATCAGaaa  >  1:729046‑M2/2‑151                                                                                                                                                      |                                                                                                                                                      AACGATGGATCGTTGAACGTTCATGGAGTTGGCTAGACAAATGTCGGCGACTTTGGAAAAACTGTGAACGTGCCCTTAACAGCAGTCTTCAAATGGTTGTATTGGCCTTCCTGAAGATAGTTCTTAAAAGATACTAGACAGGTTCTAAGGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCAAATCTGGAGAAGTTGTTTTTAAGCCTGATAATTCTGGAATCATCAGAAA  .  NC_013198/1038757‑1039055 Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG