Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_013198	1,038,046	Δ860 bp		[LGG_01023]–is36	[LGG_01023], is35, is36

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_013198	1038046–1038901	1038905	5–860	66 [0]	[0] 66	[LGG_01023]–is36	[LGG_01023], is35, is36

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 1038045	0 (0.000)	64 (0.745)	39/290	0.4	coding (872/978 nt)	LGG_01023	adenine specific DNA methylase Mod
	?	NC_013198	1038906 =	0 (0.000)				intergenic (+13/‑238)	is36/LGG_01026	transposase IS4 family protein/type III restriction‑modification system methylation subunit
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AACCATACATTGGCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGAACCTGTCTAGTATCTGCTGAATCTGGTAGAATTGTGGAAAACCGACTGAGGAGTTTGTCATGCCAGATTATCCAAGCAATATTTCTCGAGCGCAATTTGCGTTAATACAACCTGATTTAGAAAACTTCCGCAAGCATACAAGACCGCGT  .  NC_013198/1037897‑1038195                                                                                                                                                     |                                                                                                                                                       aaCCATACATTGGCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGgg                                                                                                                                                      <  1:1242412‑M1/151‑3  aCCATACATTGGCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggc                                                                                                                                                     >  1:47680‑M1/1‑148  aCCATACATTGGCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggc                                                                                                                                                     >  1:465228‑M1/1‑148  aCCATACATTGGCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggc                                                                                                                                                     >  1:419718‑M1/1‑148     aTACATTGGCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaac                                                                                                                                                  >  1:371019‑M1/1‑145       aCATTGGCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacat                                                                                                                                                >  1:125114‑M1/1‑143       aCATTGGCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacat                                                                                                                                                <  2:465239‑M1/151‑9            ggCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattccga                                                                                                                                           >  1:864556‑M1/1‑138            ggCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacga                                                                                                                                           <  2:1078971‑M1/151‑14            ggCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacga                                                                                                                                           >  1:1079339‑M1/1‑138            ggCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacga                                                                                                                                           >  2:929166‑M1/1‑138                 aTGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataa                                                                                                                                      >  2:218262‑M1/1‑133                    cTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatat                                                                                                                                   <  1:190653‑M1/151‑22                       aGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACTACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattac                                                                                                                                <  2:1151721‑M1/151‑25                        gAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattact                                                                                                                               >  2:908581‑M1/1‑126                         aaCATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactg                                                                                                                              <  2:638563‑M1/151‑27                         aaCATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactg                                                                                                                              <  1:285930‑M1/151‑27                         aaCATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggaaacataacgatctataattactg                                                                                                                              >  2:1129083‑M1/1‑125                               aataaatTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctccca                                                                                                                        >  2:263374‑M1/1‑119                                                cTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccattttt                                                                                                       >  2:901080‑M1/1‑102                                                              cATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttcaacctaaaaatgg                                                                                         >  2:835224‑M1/1‑88                                                                     ggATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggaga                                                                                  >  1:1086399‑M1/1‑81                                                                     ggATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggaga                                                                                  >  1:970138‑M1/1‑81                                                                       ataataTAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatg                                                                                >  2:322528‑M1/1‑79                                                                         aataTAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggt                                                                              >  1:984986‑M1/1‑77                                                                          atatAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtc                                                                             >  2:105210‑M1/1‑76                                                                          atatAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtc                                                                             >  1:408974‑M1/1‑76                                                                              aaaCTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaa                                                                         >  1:1032727‑M1/1‑72                                                                              aaaCTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaa                                                                         >  2:524372‑M1/1‑72                                                                                aCTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaaga                                                                       <  1:322519‑M1/151‑82                                                                                 cTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagat                                                                      >  1:345674‑M1/1‑69                                                                                 cTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagat                                                                      >  2:1221787‑M1/1‑69                                                                                   aTTCAAATCCGGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatac                                                                    >  2:133614‑M1/1‑67                                                                                       aaaTCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaatt                                                                <  2:408984‑M1/151‑89                                                                                       aaaTCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaatt                                                                <  1:908897‑M1/151‑89                                                                                        aaTCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaatta                                                               >  2:849344‑M1/1‑62                                                                                             aGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaa                                                          <  2:864239‑M1/151‑95                                                                                                     aCTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaa                                                  >  2:1160621‑M1/1‑49                                                                                                      cTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaa                                                 >  1:842150‑M1/1‑48                                                                                                        gacagggagcgtGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatc                                               <  1:419708‑M1/146‑106                                                                                                        cAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatc                                               <  2:352880‑M1/151‑106                                                                                                        cAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatc                                               >  1:839192‑M1/1‑46                                                                                                             ggAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatcctgtc                                          >  2:419719‑M1/1‑41                                                                                                                gCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaag                                       >  1:846602‑M1/1‑38                                                                                                                  gTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagtt                                     >  2:1190418‑M1/1‑36                                                                                                                  gTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagtt                                     >  2:707708‑M1/1‑36                                                                                                                       gagCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttt                                <  1:915724‑M1/151‑121                                                                                                                       gagCAGGAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttt                                >  1:812207‑M1/1‑31                                                                                                                            ggAGATGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagc                           >  1:1025491‑M1/1‑26                                                                                                                               gaTGTTAGGAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctg                        >  1:314618‑M1/1‑23                                                                                                                                      ggAGCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattc                 <  1:105199‑M1/151‑136                                                                                                                                         gCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctgg              >  1:965562‑M1/1‑13                                                                                                                                         gCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctgg              >  2:253623‑M1/1‑13                                                                                                                                         gCCCAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctgg              >  2:349138‑M1/1‑13                                                                                                                                            cAAACCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaat           <  2:408033‑M1/151‑142                                                                                                                                            agaaccTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaat           <  1:1120901‑M1/149‑142                                                                                                                                              aaCCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaatct         >  2:1120534‑M1/1‑8                                                                                                                                              aaCCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaatca         >  1:1216292‑M1/1‑8                                                                                                                                              aaCCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaatca         >  1:1209859‑M1/1‑8                                                                                                                                              aaCCTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaatca         >  2:926310‑M1/1‑8                                                                                                                                                ccTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaatcatc       >  2:752440‑M1/1‑6                                                                                                                                                ccTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaatcatc       >  1:640852‑M1/1‑6                                                                                                                                                ccTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaatcata       >  2:247659‑M1/1‑6                                                                                                                                                ccTAAGggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaataaaatctggagaagttgtttttaagcctgataattctggaatcatc       >  2:1163178‑M1/1‑6                                                                                                                                                     gggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaatcatcagaaa  >  1:53217‑M1/1‑1                                                                                                                                                     gggcaacattacgatataatattactgctcccaatggaaagaccatttttccacctaaaaatgggtggagatggtctaaagatacaattaatgaaaaaatcaaatctggagaagttgtttttaagcctgataattctggaatcatcagaaa  >  1:729046‑M1/1‑1                                                                                                                                                     |                                                                                                                                                       AACCATACATTGGCTTATGCTAAGAACATAAATAAATTGAACCCGTTCTTTTTAAAGAGAACATCAAAGGATAATATAAACTATTCAAATCCAGACAACGACTCAAATGGAGCGTGGAGAGCAGGAGATGTTAGGAGCCCAAACCTAAGAACCTGTCTAGTATCTGCTGAATCTGGTAGAATTGTGGAAAACCGACTGAGGAGTTTGTCATGCCAGATTATCCAAGCAATATTTCTCGAGCGCAATTTGCGTTAATACAACCTGATTTAGAAAACTTCCGCAAGCATACAAGACCGCGT  .  NC_013198/1037897‑1038195 Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG