mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.17d
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 2,765,383 | 0 | G→A | 100.0% | 6.8 | 79 | H249Y (CAC→TAC) | glvA | maltose‑6'‑phosphate glucosidase (GH4) |
| * | NC_013198 | 751,633 | 0 | T→C | 100.0% | 4.8 | 155 | intergenic (+66/‑193) | napA/gph | Na/H antiporter/haloacid dehalogenase‑like family hydrolase |
| * | NC_013198 | 2,001,718 | 0 | G→T | 100.0% | 3.2 | 1 | T16T (ACC→ACA) | is48 | transposase IS5 family protein |
| * | NC_013198 | 2,001,814 | 0 | A→T | 100.0% | 1.8 | 1 | intergenic (‑49/+7) | is48/is49 | transposase IS5 family protein/transposase |
| * | NC_013198 | 2,001,711 | 0 | A→C | 100.0% | 0.9 | 1 | S19A (TCG→GCG) | is48 | transposase IS5 family protein |
| * | NC_013198 | 2,001,712 | 0 | A→T | 100.0% | 0.6 | 1 | F18L (TTT→TTA) | is48 | transposase IS5 family protein |
| * | NC_013198 | 2,001,723 | 0 | A→T | 100.0% | 0.6 | 1 | W15R (TGG→AGG) | is48 | transposase IS5 family protein |
| * | NC_013198 | 2,001,734 | 0 | G→T | 100.0% | 0.6 | 1 | A11E (GCA→GAA) | is48 | transposase IS5 family protein |
| * | NC_013198 | 2,001,746 | 0 | T→G | 100.0% | 0.6 | 1 | Y7S (TAC→TCC) | is48 | transposase IS5 family protein |
| * | NC_013198 | 2,001,756 | 0 | G→T | 100.0% | 0.6 | 1 | P4T (CCG→ACG) | is48 | transposase IS5 family protein |
| * | NC_013198 | 2,001,759 | 0 | T→G | 100.0% | 0.6 | 1 | I3L (ATT→CTT) | is48 | transposase IS5 family protein |
| * | NC_013198 | 2,001,827 | 0 | A→T | 100.0% | 0.8 | 1 | A166A (GCT→GCA) | is49 | transposase |
| * | NC_013198 | 2,521,124 | 0 | A→G | 100.0% | 0.6 | 1 | S145P (CTG→CCG) | is63 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,521,127 | 0 | A→G | 100.0% | 0.6 | 1 | I144T (ATC→ACC) | is63 | transposase IS3/IS911 family protein |
| Marginal new junction evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | 1058951 = | 78 (1.000) | 12 (0.154) | 8/292 | 4.5 | coding (53/183 nt) | LGG_01046 | hypothetical protein |
| ? | NC_013198 | 1872897 = | 56 (0.699) | intergenic (‑27/+113) | LGG_01842/LGG_01843 | 5‑methylcytosine‑specific restriction enzyme MRR/hypothetical protein | ||||
| * | ? | NC_013198 | 1873857 = | 0 (0.000) | 12 (0.155) | 6/290 | 5.2 | intergenic (‑53/‑48) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| ? | NC_013198 | = 1873978 | 58 (0.724) | coding (74/177 nt) | LGG_01844 | hypothetical protein | ||||
| * | ? | NC_013198 | = 1914709 | 64 (0.901) | 12 (0.169) | 5/266 | 5.2 | intergenic (+79/‑14) | LGG_01872/LGG_01873 | melibiose permease II/hypothetical protein |
| ? | NC_013198 | = 1914755 | 70 (0.873) | coding (33/165 nt) | LGG_01873 | hypothetical protein | ||||
| * | ? | NC_013198 | = 727464 | 76 (1.009) | 6 (0.080) | 5/282 | 5.5 | intergenic (+162/‑522) | LGG_00716/lexA | hypothetical protein/LexA repressor |
| ? | NC_013198 | = 727579 | 68 (0.848) | intergenic (+277/‑407) | LGG_00716/lexA | hypothetical protein/LexA repressor | ||||
| * | ? | NC_013198 | = 1873050 | 16 (0.209) | 10 (0.131) | 5/286 | 5.5 | coding (755/795 nt) | LGG_01843 | hypothetical protein |
| ? | NC_013198 | = 1873097 | 12 (0.150) | coding (708/795 nt) | LGG_01843 | hypothetical protein | ||||
| * | ? | NC_013198 | 1886718 = | 77 (1.084) | 6 (0.084) | 3/266 | 6.3 | coding (105/156 nt) | LGG_01856 | hypothetical protein |
| ? | NC_013198 | 1886798 = | 68 (0.848) | coding (25/156 nt) | LGG_01856 | hypothetical protein | ||||
| * | ? | NC_013198 | 2122110 = | 64 (0.844) | 5 (0.066) | 3/284 | 6.5 | intergenic (‑168/+326) | efp/yrjD | protein elongation factor P/hypothetical protein |
| ? | NC_013198 | 2122257 = | 67 (0.836) | intergenic (‑315/+179) | efp/yrjD | protein elongation factor P/hypothetical protein | ||||
| * | ? | NC_013198 | 547746 = | 73 (0.969) | 2 (0.027) | 3/282 | 6.5 | intergenic (+145/+381) | ycgG/gor | aldo/keto reductase family oxidoreductase/alcohol dehydrogenase |
| ? | NC_013198 | 547864 = | 64 (0.799) | intergenic (+263/+263) | ycgG/gor | aldo/keto reductase family oxidoreductase/alcohol dehydrogenase | ||||
| * | ? | NC_013198 | = 2418100 | 79 (1.034) | 3 (0.039) | 3/286 | 6.6 | coding (174/1320 nt) | pepC1 | aminopeptidase C |
| ? | NC_013198 | = 2418125 | 80 (0.998) | coding (199/1320 nt) | pepC1 | aminopeptidase C | ||||
| * | ? | NC_013198 | = 2743759 | 97 (1.316) | 3 (0.041) | 2/276 | 7.1 | intergenic (+55/+248) | LGG_02681/fucU | hypothetical protein/L‑fucose isomerase/ RbsD or FucU transport associated protein |
| ? | NC_013198 | = 2743765 | 86 (1.073) | intergenic (+61/+242) | LGG_02681/fucU | hypothetical protein/L‑fucose isomerase/ RbsD or FucU transport associated protein | ||||