mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.17d
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 2,158,710 | 0 | G→A | 100.0% | 9.5 | 41 | V25V (GTG→GTA) | LGG_02095 | type II restriction enzyme methylase subunit |
| * | NC_013198 | 508,175 | 0 | A→. | 100.0% | 4.6 | 1 | coding (833/1419 nt) | is27 | transposase IS5 family protein |
| * | NC_013198 | 828,116 | 0 | A→. | 100.0% | 4.6 | 1 | noncoding (49/116 nt) | 5S rRNA | 5S ribosomal RNA |
| Marginal new junction evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | = 130540 | 105 (1.332) | 127 (1.611) | 8/266 | 3.2 | intergenic (+79/‑331) | rplI/dnaB | 50S ribosomal protein L9/Replicative DNA helicase |
| ? | NC_013198 | = 130586 | 131 (1.473) | intergenic (+125/‑285) | rplI/dnaB | 50S ribosomal protein L9/Replicative DNA helicase | ||||
| * | ? | NC_013198 | 1914693 = | 209 (2.651) | 14 (0.178) | 8/266 | 3.2 | intergenic (+63/‑30) | LGG_01872/LGG_01873 | melibiose permease II/hypothetical protein |
| ? | NC_013198 | 1914773 = | 126 (1.417) | coding (51/165 nt) | LGG_01873 | hypothetical protein | ||||
| * | ? | NC_013198 | 2203807 = | 71 (0.868) | 16 (0.196) | 8/276 | 3.3 | intergenic (+236/+371) | LGG_02133/LGG_02134 | hypothetical protein/MarR family transcriptional regulator |
| ? | NC_013198 | 2203951 = | 67 (0.753) | intergenic (+380/+227) | LGG_02133/LGG_02134 | hypothetical protein/MarR family transcriptional regulator | ||||
| * | ? | NC_013198 | 130524 = | 251 (3.183) | 54 (0.685) | 7/266 | 3.4 | intergenic (+63/‑347) | rplI/dnaB | 50S ribosomal protein L9/Replicative DNA helicase |
| ? | NC_013198 | 130604 = | 89 (1.001) | intergenic (+143/‑267) | rplI/dnaB | 50S ribosomal protein L9/Replicative DNA helicase | ||||
| * | ? | NC_013198 | = 2688793 | 139 (1.651) | 13 (0.154) | 7/284 | 3.6 | intergenic (+185/‑315) | LGG_02628/uvrA | MarR family transcriptional regulator/excinuclease ABC subunit A |
| ? | NC_013198 | = 2688926 | 135 (1.518) | intergenic (+318/‑182) | LGG_02628/uvrA | MarR family transcriptional regulator/excinuclease ABC subunit A | ||||
| * | ? | NC_013198 | 807226 = | 73 (0.892) | 20 (0.244) | 7/276 | 3.5 | coding (19/153 nt) | LGG_00795 | hypothetical protein |
| ? | NC_013198 | = 807588 | 73 (0.821) | intergenic (+228/‑81) | LGG_00795/yfnB | hypothetical protein/haloacid dehalogenase‑like family hydrolase | ||||
| * | ? | NC_013198 | = 1914709 | 57 (0.723) | 161 (2.042) | 6/266 | 3.7 | intergenic (+79/‑14) | LGG_01872/LGG_01873 | melibiose permease II/hypothetical protein |
| ? | NC_013198 | = 1914755 | 72 (0.810) | coding (33/165 nt) | LGG_01873 | hypothetical protein | ||||
| * | ? | NC_013198 | 547746 = | 93 (1.113) | 18 (0.215) | 6/282 | 3.9 | intergenic (+145/+381) | ycgG/gor | aldo/keto reductase family oxidoreductase/alcohol dehydrogenase |
| ? | NC_013198 | 547864 = | 100 (1.125) | intergenic (+263/+263) | ycgG/gor | aldo/keto reductase family oxidoreductase/alcohol dehydrogenase | ||||
| * | ? | NC_013198 | = 2627475 | 99 (1.160) | 11 (0.129) | 6/288 | 4.0 | intergenic (‑6/+518) | glmU/LGG_02563 | UDP‑N‑acetylglucosamine pyrophosphorylase/ N‑acetylglucosamine‑1‑phosphate uridyltransferase/glycopeptide antibiotics resistance protein |
| ? | NC_013198 | = 2627667 | 77 (0.866) | intergenic (‑198/+326) | glmU/LGG_02563 | UDP‑N‑acetylglucosamine pyrophosphorylase/ N‑acetylglucosamine‑1‑phosphate uridyltransferase/glycopeptide antibiotics resistance protein | ||||
| * | ? | NC_013198 | 1886718 = | 81 (1.027) | 78 (0.989) | 5/266 | 4.1 | coding (105/156 nt) | LGG_01856 | hypothetical protein |
| ? | NC_013198 | 1886798 = | 48 (0.540) | coding (25/156 nt) | LGG_01856 | hypothetical protein | ||||