| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_013198 | 1,873,110 | 3 bp→TCC | coding (693‑695/795 nt) | LGG_01843 | hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 1,873,110 | 0 | C→T | 100.0% | 31.6 | 10 | S232N (AGT→AAT) | LGG_01843 | hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (7/2): ref base (0/0): total (8/2) | ||||||||||
| * | NC_013198 | 1,873,111 | 0 | T→C | 100.0% | 20.1 | 10 | S232G (AGT→GGT) | LGG_01843 | hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/2): ref base (2/0): total (8/2) | ||||||||||
| * | NC_013198 | 1,873,112 | 0 | T→C | 100.0% | 20.9 | 10 | R231R (AGA→AGG) | LGG_01843 | hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/2): ref base (2/0): total (8/2) | ||||||||||
GTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATG...AGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTAGGCGGTGATGGCC.GGGCTTTGGCCATTGCGGCTGAGGTCCTTACACGCAGACTTCTGCGCCGGCGAACGCGTT.T.ATGAGCGTGAACCGACGCGCTTAGAAACCGGAGCATAAGTGGCCTTGAGCGTGATGACCGGGTTTTGGTCATTGCGCTCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCG . NC_013198/1872975‑1873243
|||
gTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATG...AGCGTGACCCGGCCCGCTTAGGGATCGGAGCGAAAGTGCCCTTGGGCG.TGATGGCCTGGGCT.CGGCCATTGCGACCCAGGTCCTTACACTCCGATCCCTGCGCCggtgtac > 2:923121/1‑146
gTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATG...AGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCG.TGATGGCCTGGGCTT.GGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAAc > 2:521532/1‑151
gTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATG...AGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCG.TGATGGCCTGGGCTT.GGCCATTGCGACCAAGGTCCTTACACCCCGAACCCTGCGCCGGTGAAc > 2:1035921/1‑151
cttacactccgatcccTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCG.TGATGACC.GGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAAc > 1:1254860/16‑151
ggCTGGCGAACGCGTTATG...AGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCG.TGATGGCCTGGGCTT.GGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAAcc < 2:1099270/151‑1
ggCTGGCGAACGCGTTATG...AGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCG.TGATGGCCTGGGCTT.GGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAAcc < 2:837939/151‑1
ggtgAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCG.TGATGACC.GGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCg > 2:624481/4‑151
gTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCg > 2:1253928/1‑151
gTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCg > 2:381623/1‑151
gTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCg > 2:542582/1‑151
|||
GTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATG...AGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTAGGCGGTGATGGCC.GGGCTTTGGCCATTGCGGCTGAGGTCCTTACACGCAGACTTCTGCGCCGGCGAACGCGTT.T.ATGAGCGTGAACCGACGCGCTTAGAAACCGGAGCATAAGTGGCCTTGAGCGTGATGACCGGGTTTTGGTCATTGCGCTCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCG . NC_013198/1872975‑1873243
Base quality scores:
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 17 ≤
ATCG
< 30 ≤
ATCG
< 39 ≤
ATCG
|