Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_013198	1,873,879	T→C	intergenic (‑75/‑26)	LGG_01843/LGG_01844	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_013198	1,873,879	0	T→C	100.0%	68.7	17	intergenic (‑75/‑26)	LGG_01843/LGG_01844	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (12/5):  ref base (0/0):  total (12/5)

AACGGTCGGGCAACGTGAACCGACGCGCTTAGAAATCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAGCGCGTTATGGTGACCGCAAGC  .  NC_013198/1873844‑1874025                                    |                                                                                                                                                   gcgttatggtgagcGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTg                                 >  2:1069198/14‑151 gcgttatggtgagcGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTg                                 >  2:372533/14‑151  cgttatggtgagcGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTgc                                >  2:449989/13‑151   gttatggtgagcGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTgcg                               >  1:312135/12‑151             gcGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAgcg                     >  2:1022928/2‑151             gcGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAgcg                     >  2:1087047/2‑151             gcGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAgcg                     >  2:865250/2‑151             gcGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAgcg                     >  2:835102/2‑151             gcGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAgcg                     >  2:423934/2‑151                 gaaccagcccggttAGAAACCGGAGCATAAGTGGCCTTGGGCGGGAGGACCGGGCTTTGGTCATTGCGCCCAAGGACCTTATGTGCAGGGTTCTGGGCTGGCGGACGCGTTATGGGGAGCGTGAGCCGACTTCTGCGCCGGGGAGcgcggt                 >  2:94148/13‑149                  aaccagcccggttAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAGCGCGTTa                >  2:1023328/12‑151                     cagcccggttAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAGCGCGTTATgg             <  2:93384/143‑1                     cagcccggttAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAGCGCGTTATgg             <  1:1184094/143‑1                          cggttAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAGCGCGTTATGGTGAcc        <  2:252707/148‑1                          cggttAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAGCGCGTTATGGTGAcc        <  2:161736/148‑1                            gttAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAGCGCGTTATGGGGACCGc      >  2:608161/2‑151                                gAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAGCGCGTTATGGTGACCGCAAgc  <  1:916477/151‑1                                    |                                                                                                                                                   AACGGTCGGGCAACGTGAACCGACGCGCTTAGAAATCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGGTGAGCGTGATCCGACTTCTGCGCCGGGGAGCGCGTTATGGTGACCGCAAGC  .  NC_013198/1873844‑1874025 Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG