breseq  version 0.17d  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Read File Information

read filereadsbaseslongest
errors01_R1991,413149,703,363151 bases
errors01_R2991,413149,703,363151 bases
total1,982,826299,406,726151 bases

Reference Sequence Information

seq idlengthcoveragenbinom meannbinom sizedescription
coveragedistributionNC_0131983,010,11186.886.223.8Lactobacillus rhamnosus GG, complete genome.
total3,010,111

Junction Prediction Information

reference sequenceread start probability
NC_0131980.84391

Execution Times

stepstartendelapsed
Read and reference sequence file input17:19:28 21 May 201217:21:33 21 May 20122 minutes 5 seconds
Read alignment to reference genome17:21:34 21 May 201217:52:07 21 May 201230 minutes 33 seconds
Preprocessing alignments for candidate junction identification17:52:07 21 May 201217:54:26 21 May 20122 minutes 19 seconds
Preliminary analysis of coverage distribution17:54:26 21 May 201217:58:26 21 May 20124 minutes 0 seconds
Identifying candidate junctions17:58:26 21 May 201217:58:32 21 May 20126 seconds
Candidate junction alignment17:58:32 21 May 201218:13:29 21 May 201214 minutes 57 seconds
Resolving alignments with candidate junctions18:13:29 21 May 201218:16:07 21 May 20122 minutes 38 seconds
Creating BAM files18:16:07 21 May 201220:07:28 21 May 20121 hour 51 minutes 21 seconds
Tabulating error counts20:07:28 21 May 201220:09:06 21 May 20121 minute 38 seconds
Re-calibrating base error rates20:09:06 21 May 201220:09:11 21 May 20125 seconds
Read alignment mutations20:09:11 21 May 201220:23:54 21 May 201214 minutes 43 seconds
Output20:23:54 21 May 201220:24:43 21 May 201249 seconds
Total 3 hours 5 minutes 14 seconds