mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.17d
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 308,393 | 0 | T→. | 100.0% | 2.5 | 1 | noncoding (638/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,409 | 0 | T→. | 100.0% | 2.6 | 1 | noncoding (654/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,421 | 0 | A→G | 100.0% | 2.3 | 1 | noncoding (666/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 2,762,611 | 0 | G→T | 100.0% | 2.4 | 2 | P126T (CCC→ACC) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 308,348 | 0 | G→C | 100.0% | 1.2 | 1 | noncoding (593/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,369 | 0 | A→G | 100.0% | 1.0 | 1 | noncoding (614/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,373 | 0 | T→G | 100.0% | 1.2 | 1 | noncoding (618/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,382 | 0 | A→G | 100.0% | 1.0 | 1 | noncoding (627/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,405 | 0 | T→G | 100.0% | 1.0 | 1 | noncoding (650/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,413 | 0 | A→G | 100.0% | 1.3 | 1 | noncoding (658/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,418 | 0 | G→T | 100.0% | 1.4 | 1 | noncoding (663/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,430 | 0 | T→G | 100.0% | 1.9 | 1 | noncoding (675/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,435 | 0 | A→G | 100.0% | 1.2 | 1 | noncoding (680/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,446 | 0 | G→T | 100.0% | 1.4 | 1 | noncoding (691/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,448 | 0 | A→G | 100.0% | 1.0 | 1 | noncoding (693/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 2,762,570 | 0 | A→G | 100.0% | 1.2 | 1 | A139A (GCT→GCC) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,620 | 0 | G→T | 100.0% | 1.0 | 2 | H123N (CAT→AAT) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,635 | 0 | G→C | 100.0% | 1.5 | 2 | R118G (CGG→GGG) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,641 | 1 | .→C | 100.0% | 1.3 | 3 | coding (346/537 nt) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,644 | 0 | G→C | 100.0% | 1.0 | 3 | R115G (CGA→GGA) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 308,344 | 0 | T→A | 100.0% | 0.7 | 1 | noncoding (589/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,349 | 0 | C→G | 100.0% | 0.5 | 1 | noncoding (594/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,353 | 0 | C→G | 100.0% | 0.5 | 1 | noncoding (598/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,354 | 0 | G→C | 100.0% | 0.8 | 1 | noncoding (599/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,356 | 0 | A→G | 100.0% | 0.5 | 1 | noncoding (601/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,359 | 0 | C→G | 100.0% | 0.5 | 1 | noncoding (604/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,383 | 0 | G→C | 100.0% | 0.8 | 1 | noncoding (628/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,398 | 1 | .→G | 100.0% | 0.4 | 1 | noncoding (643/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,399 | 0 | A→G | 100.0% | 0.4 | 1 | noncoding (644/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,427 | 0 | G→T | 100.0% | 0.9 | 1 | noncoding (672/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,429 | 0 | G→A | 100.0% | 0.7 | 1 | noncoding (674/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,441 | 0 | A→G | 100.0% | 0.4 | 1 | noncoding (686/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 308,445 | 0 | T→G | 100.0% | 0.4 | 1 | noncoding (690/1558 nt) | 16S rRNA | 16S ribosomal RNA |
| * | NC_013198 | 827,278 | 0 | T→G | 100.0% | 0.6 | 1 | noncoding (2245/2916 nt) | 23S rRNA | 23S ribosomal RNA |
| * | NC_013198 | 2,164,859 | 0 | A→G | 100.0% | 0.5 | 50 | G223G (GGT→GGC) | LGG_02097 | type II restriction enzyme methyltransferase |
| * | NC_013198 | 2,762,558 | 0 | C→T | 100.0% | 0.6 | 1 | E143E (GAG→GAA) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,559 | 0 | T→C | 100.0% | 0.9 | 1 | E143G (GAG→GGG) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,563 | 0 | G→T | 100.0% | 0.6 | 1 | Q142K (CAA→AAA) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,580 | 0 | T→A | 100.0% | 0.8 | 1 | E136V (GAG→GTG) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,584 | 0 | T→A | 100.0% | 0.8 | 1 | S135C (AGT→TGT) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,594 | 0 | C→T | 100.0% | 0.6 | 1 | K131K (AAG→AAA) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,623 | 1 | .→T | 100.0% | 0.7 | 2 | coding (364/537 nt) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,625 | 0 | A→C | 100.0% | 0.2 | 2 | V121G (GTG→GGG) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,632 | 0 | A→. | 100.0% | 0.2 | 2 | coding (355/537 nt) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,650 | 0 | T→C | 100.0% | 0.5 | 3 | K113E (AAA→GAA) | is66 | transposase IS3/IS911 family protein |
| * | NC_013198 | 2,762,659 | 0 | A→C | 100.0% | 0.8 | 3 | L110V (TTG→GTG) | is66 | transposase IS3/IS911 family protein |
| Marginal new junction evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | 1058951 = | 80 (0.825) | 46 (0.474) | 18/296 | 3.4 | coding (53/183 nt) | LGG_01046 | hypothetical protein |
| ? | NC_013198 | = 2898115 | 97 (0.987) | coding (225/237 nt) | LGG_02835 | hypothetical protein | ||||
| * | ? | NC_013198 | 807226 = | 112 (1.239) | 31 (0.343) | 10/276 | 5.3 | coding (19/153 nt) | LGG_00795 | hypothetical protein |
| ? | NC_013198 | = 807588 | 99 (1.007) | intergenic (+228/‑81) | LGG_00795/yfnB | hypothetical protein/haloacid dehalogenase‑like family hydrolase | ||||
| * | ? | NC_013198 | 1058951 = | 80 (0.836) | 17 (0.178) | 7/292 | 6.8 | coding (53/183 nt) | LGG_01046 | hypothetical protein |
| ? | NC_013198 | 1872897 = | 76 (0.773) | intergenic (‑27/+113) | LGG_01842/LGG_01843 | 5‑methylcytosine‑specific restriction enzyme MRR/hypothetical protein | ||||
| * | ? | NC_013198 | = 1914709 | 85 (0.975) | 35 (0.402) | 5/266 | 7.3 | intergenic (+79/‑14) | LGG_01872/LGG_01873 | melibiose permease II/hypothetical protein |
| ? | NC_013198 | = 1914755 | 88 (0.895) | coding (33/165 nt) | LGG_01873 | hypothetical protein | ||||
| * | ? | NC_013198 | = 385759 | 4 (0.041) | 81 (0.896) | 5/276 | 7.5 | intergenic (‑591/+486) | is10/LGG_00377 | transposase IS5 family protein/hypothetical protein |
| ? | NC_013198 | 385763 = | 0 (0.000) | intergenic (‑595/+482) | is10/LGG_00377 | transposase IS5 family protein/hypothetical protein | ||||
| * | ? | NC_013198 | 1873857 = | 0 (0.000) | 8 (0.084) | 5/290 | 7.8 | intergenic (‑53/‑48) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| ? | NC_013198 | = 1873978 | 75 (0.763) | coding (74/177 nt) | LGG_01844 | hypothetical protein | ||||
| * | ? | NC_013198 | = 727464 | 86 (0.931) | 5 (0.054) | 4/282 | 8.3 | intergenic (+162/‑522) | LGG_00716/lexA | hypothetical protein/LexA repressor |
| ? | NC_013198 | = 727579 | 106 (1.079) | intergenic (+277/‑407) | LGG_00716/lexA | hypothetical protein/LexA repressor | ||||
| * | ? | NC_013198 | 1055359 = | 121 (1.291) | 5 (0.053) | 3/286 | 9.0 | coding (66/108 nt) | LGG_01041 | hypothetical protein |
| ? | NC_013198 | 2416731 = | 105 (1.068) | intergenic (‑30/+232) | dut/LGG_02342 | deoxyuridine 5'‑triphosphate nucleotidohydrolase/hypothetical protein | ||||
| * | ? | NC_013198 | 1055359 = | 121 (1.291) | 5 (0.053) | 3/286 | 9.0 | coding (66/108 nt) | LGG_01041 | hypothetical protein |
| ? | NC_013198 | = 2367380 | 133 (1.353) | intergenic (‑359/‑154) | LGG_02291/amiC | hypothetical protein/amidase | ||||
| * | ? | NC_013198 | 1445926 = | 111 (1.185) | 5 (0.053) | 3/286 | 9.0 | coding (185/204 nt) | LGG_01442 | hypothetical protein |
| ? | NC_013198 | 1446024 = | 94 (0.956) | coding (87/204 nt) | LGG_01442 | hypothetical protein | ||||