mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.18
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 119,359 | 0 | C→A | 100.0% | 6.6 | 2 | intergenic (‑498/‑672) | lysA/lysC | diaminopimelate decarboxylase/aspartate kinase |
| * | NC_013198 | 507,769 | 0 | C→A | 100.0% | 2.9 | 2 | L413F (TTG→TTT) | is27 | transposase IS5 family protein |
| * | NC_013198 | 1,877,410 | 0 | A→G | 100.0% | 2.0 | 2 | intergenic (‑439/‑12) | LGG_01847/LGG_01848 | membrane protein/hypothetical protein |
| Marginal new junction evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | 1998770 = | 450 (0.788) | 102 (0.179) | 32/194 | 4.6 | intergenic (+363/‑314) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998901 | 1212 (2.058) | intergenic (+494/‑183) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | 1998770 = | 450 (0.796) | 94 (0.166) | 32/192 | 4.5 | intergenic (+363/‑314) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998886 | 1820 (3.090) | intergenic (+479/‑198) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | = 441330 | NA (NA) | 40 (0.075) | 15/182 | 7.2 | coding (142/336 nt) | LGG_00439 | hypothetical protein |
| ? | NC_013198 | 441386 = | 752 (1.277) | coding (198/336 nt) | LGG_00439 | hypothetical protein | ||||
| * | ? | NC_013198 | 1998841 = | 2028 (3.443) | 4 (0.007) | 14/192 | 7.7 | intergenic (+434/‑243) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998844 | 2038 (3.460) | intergenic (+437/‑240) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | 2682710 = | 1458 (2.552) | 78 (0.137) | 12/194 | 8.3 | coding (161/765 nt) | nodJ | ABC transporter permease |
| ? | NC_013198 | 2682779 = | 1516 (2.574) | coding (92/765 nt) | nodJ | ABC transporter permease | ||||
| * | ? | NC_013198 | = 223525 | 2048 (3.660) | 66 (0.118) | 12/190 | 8.2 | intergenic (‑96/‑32) | LGG_00209/rrg | ABC transporter ATPase/permease/XRE family transcriptional regulator |
| ? | NC_013198 | = 223578 | 1514 (2.571) | coding (22/906 nt) | rrg | XRE family transcriptional regulator | ||||
| * | ? | NC_013198 | 807226 = | 524 (1.011) | 48 (0.093) | 12/176 | 7.8 | coding (19/153 nt) | LGG_00795 | hypothetical protein |
| ? | NC_013198 | = 807588 | 464 (0.788) | intergenic (+228/‑81) | LGG_00795/yfnB | hypothetical protein/haloacid dehalogenase‑like family hydrolase | ||||
| * | ? | NC_013198 | = 1998841 | 2038 (3.460) | 0 (0.000) | 12/194 | 8.3 | intergenic (+434/‑243) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | 1998846 = | 2020 (3.430) | intergenic (+439/‑238) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| * | ? | NC_013198 | 2960231 = | 3962 (7.081) | 28 (0.050) | 11/190 | 8.5 | coding (583/1560 nt) | LGG_02901 | phage‑related prohead protease |
| ? | NC_013198 | 2960294 = | 3766 (6.394) | coding (646/1560 nt) | LGG_02901 | phage‑related prohead protease | ||||
| * | ? | NC_013198 | 2375023 = | 596 (1.065) | 60 (0.107) | 10/190 | 8.8 | coding (208/555 nt) | nusG | transcription antitermination protein NusG |
| ? | NC_013198 | 2375103 = | 692 (1.175) | coding (128/555 nt) | nusG | transcription antitermination protein NusG | ||||