BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_013198	1,038,046	Δ860 bp		[LGG_01023]–is36	[LGG_01023], is35, is36

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_013198	1038046–1038903	1038905	3–860	280 [0]	[0] 284	[LGG_01023]–is36	[LGG_01023], is35, is36

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 1038045	0 (0.000)	258 (0.520)	80/190	0.7	coding (872/978 nt)	LGG_01023	adenine specific DNA methylase Mod
*	?	NC_013198	1038906 =	0 (0.000)	258 (0.520)	80/190	0.7	intergenic (+13/‑238)	is36/LGG_01026	transposase IS4 family protein/type III restriction‑modification system methylation subunit
Continuation Left: 0 Continuation Right: 0

Only 100 of 284 total aligned reads displayed.


CTTTGGAAAAACTGTGAACGTGCCCTTAACAGCAGTCTTCAAATGGTTGTATTGGCCTTCCTGAAGATAGTTCTTAAAAGATACTAGACAGGTTCTAAGGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCA  >  NC_013198/1038807‑1039006


tttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaaggg                                                                                                     <  6:754141‑M2/2‑1


tttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaaggg                                                                                                     <  22:754141‑M2/2‑1


 ttaaagagaacatcaaaggataatataaactattcaaatccagacaacgcctcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGc                                                                                                    >  25:1024379‑M2/99‑101


 ttaaagagaacatcaaaggataatataaactattcaaatccagacaacgcctcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGc                                                                                                    >  9:1024379‑M2/99‑101


    aagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAAc                                                                                                 <  2:1067052‑M2/6‑1


    aagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAAc                                                                                                 >  5:551492‑M2/96‑101


    aagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAAc                                                                                                 >  21:551492‑M2/96‑101


     agagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACa                                                                                                >  3:213819‑M2/95‑101


     agagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACa                                                                                                >  17:824510‑M2/95‑101


     agagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACa                                                                                                >  19:213819‑M2/95‑101


      gagaacatcaaaggataatataaactattcaaatccagcccacgactcaaatgaagcatggcgcgaagaagaagttaggagctcaaacccaagGGCAACAt                                                                                               >  21:848660‑M2/94‑101


      gagaacatcaaaggataatataaactattcaaatccagcccacgactcaaatgaagcatggcgcgaagaagaagttaggagctcaaacccaagGGCAACAt                                                                                               >  5:848660‑M2/94‑101


      gagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACAt                                                                                               >  17:729043‑M2/94‑101


      gagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgaggagagcaacagatgttagaagccaaaacctaagGGCAACAt                                                                                               >  15:149495‑M2/94‑101


       agaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACAtt                                                                                              >  17:875807‑M2/93‑101


       agaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACAtt                                                                                              >  1:875807‑M2/93‑101


         aacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTAc                                                                                            >  12:859271‑M2/91‑101


         aacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTAc                                                                                            >  20:672195‑M2/91‑101


         aacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTAc                                                                                            >  28:859271‑M2/91‑101


         aacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTAc                                                                                            <  1:817432‑M2/11‑1


         aacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTAc                                                                                            >  4:672195‑M2/91‑101


         aacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTAc                                                                                            >  1:204094‑M2/91‑101


            atcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGat                                                                                         <  31:335098‑M2/14‑1


            atcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGat                                                                                         >  30:1246339‑M2/88‑101


            atcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGat                                                                                         >  2:522184‑M2/88‑101


            atcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGat                                                                                         <  9:387761‑M2/14‑1


            atcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGat                                                                                         <  25:387761‑M2/14‑1


             tcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGata                                                                                        >  29:1204852‑M2/87‑101


             tcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGata                                                                                        <  26:130483‑M2/15‑1


             tcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGata                                                                                        <  18:364337‑M2/15‑1


             tcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGata                                                                                        <  10:130483‑M2/15‑1


             tcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGata                                                                                        >  13:1204852‑M2/87‑101


               aaagtataatataaactattcaaatccagacaacgactaaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGAtata                                                                                      <  26:649622‑M2/17‑1


               aaagtataatataaactattcaaatccagacaacgactaaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGAtata                                                                                      <  10:649622‑M2/17‑1


                aaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataa                                                                                     >  31:1249039‑M2/84‑101


                 aggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataat                                                                                    >  4:946024‑M2/83‑101


                 aggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataat                                                                                    >  20:946024‑M2/83‑101


                   gataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAatat                                                                                  <  12:136929‑M2/21‑1


                   gataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAatat                                                                                  <  28:136929‑M2/21‑1


                    ataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATAtt                                                                                 <  13:570968‑M2/22‑1


                    ataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATAtt                                                                                 >  24:544511‑M2/80‑101


                    ataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATAtt                                                                                 <  29:570968‑M2/22‑1


                    ataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATAtt                                                                                 >  8:544511‑M2/80‑101


                     taatataaactattgaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTa                                                                                <  7:972396‑M2/23‑1


                     taatataaactattgaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTa                                                                                <  23:972396‑M2/23‑1


                     taatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTa                                                                                <  19:779733‑M2/23‑1


                     taatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTa                                                                                <  3:779733‑M2/23‑1


                     taatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagaggttaggagcccaaacctaagGGCAACCTTACAATATAATATTa                                                                                >  2:907592‑M2/79‑101


                       atataaactattcaaagccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACt                                                                              <  14:217654‑M2/25‑1


                         ataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGc                                                                            >  1:633379‑M2/75‑101


                          taaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCt                                                                           <  31:747974‑M2/28‑1


                          taaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCt                                                                           <  15:569208‑M2/28‑1


                           aaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTc                                                                          >  10:957564‑M2/73‑101


                           aaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTc                                                                          >  26:957564‑M2/73‑101


                            aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         <  21:286662‑M2/30‑1


                            aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         <  5:286662‑M2/30‑1


                              ctattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCa                                                                       >  9:820756‑M2/70‑101


                              ctattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCa                                                                       >  25:820756‑M2/70‑101


                               tattcaaatccagacaacgactcaaatggagcgtggagtgcaggagatgtaaggagcccaaacctacgGGCAACATTACGATATAATATTACTGCTCCCaa                                                                      >  18:60949‑M2/69‑101


                                attcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAAt                                                                     >  27:1186675‑M2/68‑101


                                attcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAAt                                                                     >  11:1186675‑M2/68‑101


                                 ttcaaatccagacaacgactcaactggagcgcacagcgaaggagatgttaggcccacacacctaagGGCAACATTACGATATAATATTACTGCTCCCAATg                                                                    <  1:1209191‑M2/35‑1


                                      atccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAg                                                               <  3:1073564‑M2/40‑1


                                      atccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAg                                                               <  19:1073564‑M2/40‑1


                                           gacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCAt                                                          <  1:1035637‑M2/45‑1


                                                           gagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAAt                                          <  24:955268‑M2/61‑1


                                                           gagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAAt                                          <  8:955268‑M2/61‑1


                                                            agcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATg                                         <  30:617781‑M2/62‑1


                                                                 ggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTgg                                    <  27:37816‑M2/67‑1


                                                                 ggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTgg                                    <  11:37816‑M2/67‑1


                                                                          gagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCt                           <  26:211610‑M2/76‑1


                                                                          gagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCt                           <  10:211610‑M2/76‑1


                                                                           agatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTa                          >  8:392519‑M2/25‑101


                                                                            gatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTaa                         <  14:744593‑M2/78‑1


                                                                                 taggcgcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGGAAGAGCATGTTTAACACTAAAAATGGGTGGCGATGGTCTCAAGatc                    >  27:917190‑M2/19‑100


                                                                                 taggcgcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGGAAGAGCATGTTTAACACTAAAAATGGGTGGCGATGGTCTCAAGatc                    >  11:917190‑M2/19‑100


                                                                                      gcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAAtt               <  14:1025963‑M2/88‑1


                                                                                       cccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTa              <  22:1248041‑M2/89‑1


                                                                                       cccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTa              <  6:1248041‑M2/89‑1


                                                                                        ccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTCACGATACAATTaa             >  20:518929‑M2/12‑101


                                                                                        ccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTCACGATACAATTaa             >  4:518929‑M2/12‑101


                                                                                        ccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTaa             <  24:420960‑M2/90‑1


                                                                                         taaacataagTCCAACATTACGATATAACACGACGGCTCCCAATGGACAAACCATTTTTCCACCTACCAATCTGGGTAGATGGTCTAAAAATACAATTAAt            <  17:1105643‑M2/91‑1


                                                                                          aaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATg           <  29:43766‑M2/92‑1


                                                                                          aaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATg           <  13:43766‑M2/92‑1


                                                                                            acctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaa         <  28:490503‑M2/94‑1


                                                                                            acctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaa         <  12:490503‑M2/94‑1


                                                                                             cctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaaa        >  20:115835‑M2/7‑101


                                                                                             cctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaaa        >  4:115835‑M2/7‑101


                                                                                              ctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaaaa       >  7:344185‑M2/6‑101


                                                                                              ctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaaaa       <  31:925663‑M2/96‑1


                                                                                              ctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaaaa       >  23:344185‑M2/6‑101


                                                                                                 agGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAAt    <  11:486871‑M2/99‑1


                                                                                                 agGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAAt    <  27:486871‑M2/99‑1


                                                                                                  gGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGGCCATTTTCCCACTTAGAGATGGGTGGAGGAGTTCTAAACAGACATTTAATGTAAAAATc   <  15:842488‑M2/100‑1


                                                                                                  gGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATc   <  8:1121612‑M2/100‑1


                                                                                                  gGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATc   <  24:1121612‑M2/100‑1


                                                                                                  gGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATc   <  17:250793‑M2/100‑1


                                                                                                   ggCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAaaatca  >  15:942018/1‑101


                                                                                                   ggCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAaaatca  <  17:1240677/101‑1


CTTTGGAAAAACTGTGAACGTGCCCTTAACAGCAGTCTTCAAATGGTTGTATTGGCCTTCCTGAAGATAGTTCTTAAAAGATACTAGACAGGTTCTAAGGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCA  >  NC_013198/1038807‑1039006

Base quality scores:


ATCG

< 3 ≤


ATCG

< 17 ≤


ATCG

< 29 ≤


ATCG

< 35 ≤


ATCG

< 41 ≤


ATCG