| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_013198 | 1,873,850 | 5 bp→TTATG | intergenic (‑46/‑51) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 1,873,850 | 0 | C→T | 100.0% | 10.3 | 4 | intergenic (‑46/‑55) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/0): ref base (0/0): total (4/0) | ||||||||||
| * | NC_013198 | 1,873,851 | 0 | G→T | 100.0% | 14.0 | 4 | intergenic (‑47/‑54) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/0): ref base (0/0): total (4/0) | ||||||||||
| * | NC_013198 | 1,873,852 | 0 | G→A | 100.0% | 14.2 | 4 | intergenic (‑48/‑53) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/0): ref base (0/0): total (4/0) | ||||||||||
| * | NC_013198 | 1,873,853 | 0 | G→T | 100.0% | 14.4 | 4 | intergenic (‑49/‑52) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/0): ref base (0/0): total (4/0) | ||||||||||
| * | NC_013198 | 1,873,854 | 0 | C→G | 100.0% | 14.3 | 4 | intergenic (‑50/‑51) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/0): ref base (0/0): total (4/0) | ||||||||||
CCTTACACGCAGACTTCTGCGCCGGCGAACG.GTCGGGCAACGTGAACCGACGCGCTTAGAAATCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTT > NC_013198/1873817‑1873916
|||||
ccTTACACGCAGACTTCTGCGCCGGCGAACGCGTTTATGAGCGTGAACCGACGCGCTTAGAAATCGGAGCATAAGTGGCCTTGAGCGTGATGGCCGGGCtt > 19:178006/1‑101
ccTTACACGCAGACTTCTGCGCCGGCGAACGCGTTTATGAGCGTGAACCGACGCGCTTAGAAATCGGAGCATAAGTGGCCTTGAGCGTGATGGCCGGGCtt > 5:178006/1‑101
ccTTACACGCAGACTTCTGCGCCGGCGAACGCGTTTATGAGCGTGAACCGACGCGCTTAGAAACCGGATCATAAGTGGCCTTGAGCGTGATGACCGGGCtt > 18:714210/1‑101
ccTTACACGCAGACTTCTGCGCCGGCGAACGCGTTTATGAGCGTGAACCGACGCGCTTAGAAACCGGATCATAAGTGGCCTTGAGCGTGATGACCGGGCtt > 4:714210/1‑101
|||||
CCTTACACGCAGACTTCTGCGCCGGCGAACG.GTCGGGCAACGTGAACCGACGCGCTTAGAAATCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTT > NC_013198/1873817‑1873916
Base quality scores:
ATCG
< 3 ≤
ATCG
< 12 ≤
ATCG
< 19 ≤
ATCG
< 26 ≤
ATCG
< 37 ≤
ATCG
|