| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_013198 | 1,873,277 | 3 bp→GGA | coding (526‑528/795 nt) | LGG_01843 | hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_013198 | 1,873,277 | 0 | A→G | 100.0% | 26.8 | 6 | L176L (CTT→CTC) | LGG_01843 | hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/6): ref base (0/0): total (0/6) | ||||||||||
| * | NC_013198 | 1,873,278 | 0 | A→G | 100.0% | 26.0 | 6 | L176P (CTT→CCT) | LGG_01843 | hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/6): ref base (0/0): total (0/6) | ||||||||||
| * | NC_013198 | 1,873,279 | 0 | G→A | 100.0% | 20.6 | 6 | L176F (CTT→TTT) | LGG_01843 | hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/6): ref base (0/0): total (0/6) | ||||||||||
GCGCTCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGATCGCGTTTCAGAGCGTGAACCGGCGCGTTCAGAAGTCGGAGTGTAAGTGGCCTCAGACGTGAT > NC_013198/1873206‑1873307
|||
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt < 17:708253/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt < 18:273237/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt < 24:609387/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt < 2:708253/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt < 3:273237/101‑1
gcgcCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTT.ATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGAt < 9:609387/101‑1
|||
GCGCTCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGATCGCGTTTCAGAGCGTGAACCGGCGCGTTCAGAAGTCGGAGTGTAAGTGGCCTCAGACGTGAT > NC_013198/1873206‑1873307
Base quality scores:
ATCG
< 3 ≤
ATCG
< 23 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|