BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_013198	1,038,046	Δ860 bp		[LGG_01023]–is36	[LGG_01023], is35, is36

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_013198	1038046–1038902	1038905	4–860	354 [2]	[0] 346	[LGG_01023]–is36	[LGG_01023], is35, is36

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 1038045	2 (0.003)	314 (0.528)	91/190	1.3	coding (872/978 nt)	LGG_01023	adenine specific DNA methylase Mod
*	?	NC_013198	1038906 =	0 (0.000)	314 (0.528)	91/190	1.3	intergenic (+13/‑238)	is36/LGG_01026	transposase IS4 family protein/type III restriction‑modification system methylation subunit
Continuation Left: 0 Continuation Right: 0

Only 100 of 346 total aligned reads displayed.


ACTTTGGAAAAACTGTGAACGTGCCCTTAACAGCAGTCTTCAAATGGTTGTATTGGCCTTCCTGAAGATAGTTCTTAAAAGATACTAGACAGGTTCTAAGGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCA  >  NC_013198/1038806‑1039006


ttttaaagagaacatcaaaggataatataacctattctaatccagacaacgactaaaatggagcgtggagagcatgagatgttaggagcccaaagttaagg                                                                                                      >  20:257612‑M2/101‑101


ttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagg                                                                                                      <  10:127900‑M2/1‑1


ttttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagg                                                                                                      <  26:1176257‑M2/1‑1


 tttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaaggg                                                                                                     >  1:140848‑M2/100‑101


  ttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGc                                                                                                    <  6:452655‑M2/3‑1


  ttaaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGc                                                                                                    >  5:1063789‑M2/99‑101


    aaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCaa                                                                                                  <  18:374002‑M2/5‑1


    aaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCaa                                                                                                  >  24:25957‑M2/97‑101


    aaagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCaa                                                                                                  <  3:374002‑M2/5‑1


     aagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAAc                                                                                                 >  5:1232565‑M2/96‑101


     aagagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAAc                                                                                                 >  6:998066‑M2/96‑101


     aagagaacaacaaagataagtataaccaatccgacgcgagagaacacctgaagtggcgcgtggagagcaggagatgttaggagcccaaccctaagGGCAAc                                                                                                 <  9:87133‑M2/6‑1


      agagaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACa                                                                                                <  7:525197‑M2/7‑1


        agaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACAtt                                                                                              <  14:1196470‑M2/9‑1


         gaacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTa                                                                                             >  24:1006153‑M2/92‑101


         gaacacaaaagtaaaatgtaaagtatcaaaggcaagccaccgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTa                                                                                             <  8:829090‑M2/10‑1


          aacatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTAc                                                                                            <  5:979178‑M2/11‑1


           acatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACg                                                                                           >  12:578161‑M2/90‑101


           acatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACg                                                                                           >  29:1169501‑M2/90‑101


            aatcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGa                                                                                          <  24:532361‑M2/13‑1


             atcaaagtataagataaactattcaaatccagacaaccactcaaatggagcctagagagcaggagatgttaggagcccaaacctaagGGCAACATTACGat                                                                                         <  15:71721‑M2/14‑1


              tcaaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGata                                                                                        <  28:1038341‑M2/15‑1


               caaaggataatataacctattcaaatccagtatacgtctaacagggggcggcaaacgcaggagagatgtggctcccattcctaagTGCAACATTCCGatat                                                                                       <  21:145626‑M2/16‑1


               caaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGatat                                                                                       >  22:749889‑M2/86‑101


                aaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGAtata                                                                                      <  18:1131984‑M2/17‑1


                aaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGAtata                                                                                      <  3:833124‑M2/17‑1


                aaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGAtata                                                                                      <  18:833124‑M2/17‑1


                aaaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGAtata                                                                                      <  3:1131984‑M2/17‑1


                 aaggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataa                                                                                     >  17:1163923‑M2/84‑101


                 aaggataataaaaactattcaagtccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataa                                                                                     <  11:1235956‑M2/18‑1


                  aggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataat                                                                                    <  23:776087‑M2/19‑1


                  aggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataat                                                                                    <  24:893438‑M2/19‑1


                  aggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataat                                                                                    <  28:162317‑M2/19‑1


                  aggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataat                                                                                    <  13:88797‑M2/19‑1


                  aggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataat                                                                                    <  9:124435‑M2/19‑1


                   ggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataata                                                                                   <  21:591910‑M2/20‑1


                   ggataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATataata                                                                                   >  22:512667‑M2/82‑101


                    gataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAatat                                                                                  >  29:398586‑M2/81‑101


                    gataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAatat                                                                                  <  2:129472‑M2/21‑1


                    gataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAatat                                                                                  <  13:717246‑M2/21‑1


                     ataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATAtt                                                                                 >  20:1212251‑M2/80‑101


                     ataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATAtt                                                                                 >  21:1090307‑M2/80‑101


                     ataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATAtt                                                                                 >  11:956553‑M2/80‑101


                     ataatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATAtt                                                                                 >  7:1123597‑M2/80‑101


                       aatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTAc                                                                               >  20:665276‑M2/78‑101


                       aatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTAc                                                                               >  12:45104‑M2/78‑101


                       aatataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTAc                                                                               <  14:230406‑M2/24‑1


                       aatataaactattcaaatcaagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTAc                                                                               <  29:1237337‑M2/24‑1


                        atataaactatacaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACt                                                                              <  28:59731‑M2/25‑1


                         tataaactattcaaatccagacaacgactcaaatggatcgtgaagagcaggagatgttaggggcccaaacctaagGGCAACATTACGATATAATATTACTg                                                                             <  20:969026‑M2/26‑1


                         tataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTg                                                                             >  26:847030‑M2/76‑101


                         tataaactattcaaatccagacaacgactcaaatggagagtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTg                                                                             >  28:676548‑M2/76‑101


                          ataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGc                                                                            >  10:933052‑M2/75‑101


                          ataaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGc                                                                            >  25:815215‑M2/75‑101


                           taaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCt                                                                           <  28:886074‑M2/28‑1


                           taaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCt                                                                           <  13:601009‑M2/28‑1


                            aaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTc                                                                          >  4:453894‑M2/73‑101


                            aaactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTc                                                                          >  19:453894‑M2/73‑101


                             aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         >  4:241361‑M2/72‑101


                             aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         <  3:949127‑M2/30‑1


                             aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         <  18:949127‑M2/30‑1


                             aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         >  6:1188571‑M2/72‑101


                             aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         >  19:241361‑M2/72‑101


                             aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         >  19:872444‑M2/72‑101


                             aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         >  8:483565‑M2/72‑101


                             aactattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTcc                                                                         >  4:872444‑M2/72‑101


                              actattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCtcca                                                                        >  6:800335‑M2/71‑100


                              actattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTccc                                                                        <  29:911922‑M2/31‑1


                              actattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTccc                                                                        >  17:472618‑M2/71‑101


                              actattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTccc                                                                        <  2:32578‑M2/31‑1


                              actattcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTccc                                                                        >  26:427974‑M2/71‑101


                                   tcaaatccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATgg                                                                   >  23:416894‑M2/66‑101


                                        tccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGa                                                              <  21:925891‑M2/41‑1


                                        tccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCC.AATGGAAAGAc                                                             >  16:414038‑M2/61‑101


                                         ccagacaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGAc                                                             <  7:766982‑M2/42‑1


                                             acaacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCAtt                                                         <  8:229160‑M2/46‑1


                                               aacgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCAtttt                                                       <  25:494751‑M2/48‑1


                                                acgactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCAttttt                                                      <  27:572245‑M2/49‑1


                                                  gactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTcc                                                    <  22:145081‑M2/51‑1


                                                  gactcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTcc                                                    <  25:1235067‑M2/51‑1


                                                    ctcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCAc                                                  >  13:357225‑M2/49‑101


                                                     tcaaatggagcgtggagagcaggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCAcc                                                 >  17:142599‑M2/48‑101


                                                                      agcaggagatgttaggagcccaaacctaagTGCAACATTACGATATAATATTCCTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGAt                                <  14:538750‑M2/71‑1


                                                                        caggagatgttaggagccaaaacctatgGGCAATCTTACGAGATGATATTGCCGCACCAAATGCAAATACCATTTGACTACCTAAAAATGGGTTGAGATgg                              <  10:1013744‑M2/73‑1


                                                                         aggagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGt                             <  10:523175‑M2/74‑1


                                                                         aggagaggttaggagcccaaacctaagGGCAACATTACTATATAATATTCCTGCTCGCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGt                             <  13:140563‑M2/74‑1


                                                                           gagatgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCt                           <  23:1184836‑M2/76‑1


                                                                              atgttaggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTaaa                        >  5:878477‑M2/23‑101


                                                                                   aggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATAc                   <  1:1030711‑M2/84‑1


                                                                                    ggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACa                  <  11:672953‑M2/85‑1


                                                                                    ggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACa                  <  1:523936‑M2/85‑1


                                                                                    ggagcccaaacctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACa                  <  9:619825‑M2/85‑1


                                                                                          caaacctaatGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAAt            <  24:810371‑M2/91‑1


                                                                                             acctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaa         >  2:89417‑M2/8‑101


                                                                                               ctaagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaaaa       >  16:1187840‑M2/6‑101


                                                                                                 aagGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGaaaaaa     <  27:449640‑M2/98‑1


                                                                                                  agGGCAACATTACGATATAATGTTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAAt    <  5:293840‑M2/99‑1


                                                                                                  agGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTACACCTAAAAATGTGGGGAGATAGTCGAAAGGTACAATTAACAAAAAAAt    >  7:215949‑M2/3‑101


                                                                                                   gGGCCACATTACGATATAATATTACTGCTCCCAATGGAAAGACCCTTATTCCACCTAATAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAACAATc   >  9:26589‑M2/2‑101


                                                                                                   gGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATc   <  22:1061106‑M2/100‑1


ACTTTGGAAAAACTGTGAACGTGCCCTTAACAGCAGTCTTCAAATGGTTGTATTGGCCTTCCTGAAGATAGTTCTTAAAAGATACTAGACAGGTTCTAAGGGCAACATTACGATATAATATTACTGCTCCCAATGGAAAGACCATTTTTCCACCTAAAAATGGGTGGAGATGGTCTAAAGATACAATTAATGAAAAAATCA  >  NC_013198/1038806‑1039006

Base quality scores:


ATCG

< 3 ≤


ATCG

< 21 ≤


ATCG

< 31 ≤


ATCG

< 35 ≤


ATCG

< 41 ≤


ATCG