mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.17d
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 311,792 | T→G | noncoding (2252/2916 nt) | 23S rRNA | 23S ribosomal RNA |
| RA | 615,483 | T→C | S422P (CTG→CCG) | treB | PTS system beta‑glucoside‑specific transporter subunit IIABC |
| RA | 751,632 | T→G | intergenic (+65/‑194) | napA/gph | Na/H antiporter/haloacid dehalogenase‑like family hydrolase |
| RA | 985,365 | A→G | I904I (ATT→ATC) | pacL | cation‑transporting ATPase |
| MC JC | 1,038,046 | Δ860 bp | [LGG_01023]–is36 | [LGG_01023], is35, is36 | |
| RA | 1,074,976 | G→A | E180K (GAA→AAA) | galU | UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 1,118,872 | C→T | T67T (ACC→ACT) | LGG_01118 | hypothetical protein |
| RA | 1,561,525 | C→G | intergenic (‑1158/+1687) | LGG_01544/rimL | hypothetical protein/GNAT family acetyltransferase |
| RA | 1,873,058 | A→G | P249P (CCT→CCC) | LGG_01843 | hypothetical protein |
| RA | 1,873,063 | Δ1 bp | coding (742/795 nt) | LGG_01843 | hypothetical protein |
| RA | 1,873,071 | +T | coding (734/795 nt) | LGG_01843 | hypothetical protein |
| RA | 1,873,078 | Δ1 bp | coding (727/795 nt) | LGG_01843 | hypothetical protein |
| RA | 1,873,089 | G→A | A239V (GCC→GTC) | LGG_01843 | hypothetical protein |
| RA | 1,873,091 | 2 bp→CA | coding (713‑714/795 nt) | LGG_01843 | hypothetical protein |
| RA | 1,873,105 | G→T | R234S (CGT→AGT) | LGG_01843 | hypothetical protein |
| RA | 1,873,107 | A→C | S233R (CTG→CGG) | LGG_01843 | hypothetical protein |
| RA | 1,873,110 | 3 bp→TCC | coding (693‑695/795 nt) | LGG_01843 | hypothetical protein |
| RA | 1,873,122 | C→T | R228H (CGC→CAC) | LGG_01843 | hypothetical protein |
| RA | 1,873,879 | T→C | intergenic (‑75/‑26) | LGG_01843/LGG_01844 | hypothetical protein/hypothetical protein |
| MC JC | 1,877,309 | Δ1,586 bp | LGG_01848 | LGG_01848 | |
| RA | 1,883,242 | C→A | intergenic (‑292/+93) | ABC‑SBP/LGG_01854 | ABC transporter substrate‑binding protein/hypothetical protein |
| RA | 2,060,386 | C→A | W87L (TGG→TTG) | gmk | guanylate kinase |
| RA | 2,150,514 | G→T | intergenic (‑99/+336) | LGG_02090/LGG_02091 | cytosine permease/hypothetical protein |
| RA | 2,160,010 | G→A | A459T (GCG→ACG) | LGG_02095 | type II restriction enzyme methylase subunit |
| RA | 2,163,622 | T→C | T636A (ACG→GCG) | LGG_02097 | type II restriction enzyme methyltransferase |
| RA | 2,353,548 | G→A | S767F (TCC→TTC) | LGG_02282 | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_013198 | 414193–415277 | 449549–448478 | 33202–35357 | 16 [14] | [14] 20 | is13–[is15] | 34 genes is13, fba, gatY, pts, pts, manZ, tal, LGG_00419, yhfZ, LGG_00421, LGG_00422, LGG_00423, php, yhfS, yhfX, YHFW, ilvH, LGG_00429, cbiO, cbiQ, LGG_00432, menC, nagZ, is14, tnpR, LGG_00437, LGG_00438, LGG_00439, LGG_00440, srtC1, spaA, spaB, spaC, [is15] |
| * | * | ÷ | NC_013198 | 1873127–1873845 | 1873871 | 27–745 | 16 [13] | [9] 16 | [LGG_01843] | [LGG_01843] |
| * | * | ÷ | NC_013198 | 2000998–2002396 | 2002396 | 1–1399 | 16 [15] | [11] 16 | [is48]–is49 | [is48], is49 |
| * | * | ÷ | NC_013198 | 2574329 | 2574531 | 203 | 17 [14] | [15] 16 | [LGG_02511]–[LGG_02512] | [LGG_02511], [LGG_02512] |
| Unassigned new junction evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | = 727464 | 77 (0.921) | 46 (0.550) | 11/282 | 2.7 | intergenic (+162/‑522) | LGG_00716/lexA | hypothetical protein/LexA repressor |
| ? | NC_013198 | = 727579 | NA (NA) | intergenic (+277/‑407) | LGG_00716/lexA | hypothetical protein/LexA repressor | ||||
| * | ? | NC_013198 | 1058951 = | 66 (0.752) | 30 (0.342) | 13/296 | 2.5 | coding (53/183 nt) | LGG_01046 | hypothetical protein |
| ? | NC_013198 | = 2898115 | 109 (1.226) | coding (225/237 nt) | LGG_02835 | hypothetical protein | ||||
| * | ? | NC_013198 | 2122110 = | 71 (0.843) | 42 (0.499) | 12/284 | 2.5 | intergenic (‑168/+326) | efp/yrjD | protein elongation factor P/hypothetical protein |
| ? | NC_013198 | 2122257 = | 72 (0.810) | intergenic (‑315/+179) | efp/yrjD | protein elongation factor P/hypothetical protein | ||||