breseq  version 0.17d  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 264,278 G→A A420T (GCC→ACC)  iolT transporter major facilitator superfamily MFS_1, Myo‑inositol transporter
MC JC 594,624 Δ1,586 bp LGG_00589 LGG_00589
RA 615,483 T→C S422P (CTG→CCG)  treB PTS system beta‑glucoside‑specific transporter subunit IIABC
RA 656,567 3 bp x 2 duplication glpD alpha‑glycerophosphate oxidase
RA 751,632 T→G intergenic (+65/‑194) napA/gph Na/H antiporter/haloacid dehalogenase‑like family hydrolase
RA 876,404 3 bp x 2 duplication cutC copper homeostasis protein CutC
MC JC 1,038,046 Δ860 bp [LGG_01023]–is36 [LGG_01023], is35, is36
RA 1,154,682 T→G intergenic (‑80/+353) LGG_01157/pepD transporter major facilitator superfamily MFS_1/dipeptidase A
RA 1,372,183 T→A L406M (TTG→ATG)  ycjM 2',3'‑cyclic‑nucleotide 2'‑phosphodiesterase
MC JC 1,877,309 Δ1,586 bp LGG_01848 LGG_01848
RA 1,883,242 C→A intergenic (‑292/+93) ABC‑SBP/LGG_01854 ABC transporter substrate‑binding protein/hypothetical protein
RA 1,994,717 T→A D903V (GAT→GTT)  LGG_01953 hypothetical protein
RA 2,158,707 C→T D24D (GAC→GAT)  LGG_02095 type II restriction enzyme methylase subunit
RA 2,158,710 G→A V25V (GTG→GTA)  LGG_02095 type II restriction enzyme methylase subunit
RA 2,158,719 C→T G28G (GGC→GGT)  LGG_02095 type II restriction enzyme methylase subunit
RA 2,353,548 G→A S767F (TCC→TTC)  LGG_02282 hypothetical protein
RA 2,452,317 A→G Q43Q (CAA→CAG)  LGG_02375 hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_013198 1873057–1873845 1873910 66–854 27 [26] [25] 29 [LGG_01843]–[LGG_01844] [LGG_01843], [LGG_01844]
* * ÷ NC_013198 2000968–2002394 2002394 1–1427 30 [26] [26] 27 [is48]–is49 [is48], is49
* * ÷ NC_013198 2574321 2574540–2574399 79–220 28 [24] [22] 27 [LGG_02511]–[LGG_02512] [LGG_02511], [LGG_02512]

Unassigned new junction evidence...
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? NC_013198 = 2406720 (0.000)97 (1.148) 39/292 0.5 coding (716/759 nt) LGG_00234 hypothetical protein
?NC_013198 241548 = 0 (0.000)intergenic (+21/‑25) is8/LGG_00237 transposase IS4 family protein/hypothetical protein