breseq  version 0.17d   mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	385,772	Δ3 bp	intergenic (‑604/+471)	is10/LGG_00377	transposase IS5 family protein/hypothetical protein
RA	615,483	T→C	S422P (CTG→CCG)	treB	PTS system beta‑glucoside‑specific transporter subunit IIABC
RA	751,632	2 bp→GC	intergenic (+65/‑193)	napA/gph	Na/H antiporter/haloacid dehalogenase‑like family hydrolase
RA	985,365	A→G	I904I (ATT→ATC)	pacL	cation‑transporting ATPase
MC JC	1,038,046	Δ860 bp		[LGG_01023]–is36	[LGG_01023], is35, is36
RA	1,074,976	G→A	E180K (GAA→AAA)	galU	UTP‑glucose‑1‑phosphate uridylyltransferase
RA	1,873,058	A→G	P249P (CCT→CCC)	LGG_01843	hypothetical protein
MC JC	1,877,309	Δ1,586 bp		LGG_01848	LGG_01848
RA	1,883,242	C→A	intergenic (‑292/+93)	ABC‑SBP/LGG_01854	ABC transporter substrate‑binding protein/hypothetical protein
RA	2,158,707	C→T	D24D (GAC→GAT)	LGG_02095	type II restriction enzyme methylase subunit
RA	2,158,710	G→A	V25V (GTG→GTA)	LGG_02095	type II restriction enzyme methylase subunit
RA	2,158,719	C→T	G28G (GGC→GGT)	LGG_02095	type II restriction enzyme methylase subunit
RA	2,160,010	G→A	A459T (GCG→ACG)	LGG_02095	type II restriction enzyme methylase subunit
RA	2,163,622	T→C	T636A (ACG→GCG)	LGG_02097	type II restriction enzyme methyltransferase
RA	2,164,868	T→C	V220V (GTA→GTG)	LGG_02097	type II restriction enzyme methyltransferase
RA	2,164,871	A→G	D219D (GAT→GAC)	LGG_02097	type II restriction enzyme methyltransferase
RA	2,353,548	G→A	S767F (TCC→TTC)	LGG_02282	hypothetical protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_013198	392237–393747	474456–472946	79200–82220	40 [39]	[39] 41	is11–[is26]	84 genes is11, LGG_00384, LGG_00385, LGG_00386, slyA, LGG_00388, LGG_00389, aroE, LGG_00391, LGG_00392, manR, LGG_00394, frwA1, frwB1, frwC1, tal, rpe, ulaA, ulaB, pts, is12, ulaC, tktN, tktC, scrK, lacR, frwA2, frwB2, frwC2, is13, fba, gatY, pts, pts, manZ, tal, LGG_00419, yhfZ, LGG_00421, LGG_00422, LGG_00423, php, yhfS, yhfX, YHFW, ilvH, LGG_00429, cbiO, cbiQ, LGG_00432, menC, nagZ, is14, tnpR, LGG_00437, LGG_00438, LGG_00439, LGG_00440, srtC1, spaA, spaB, spaC, is15, LGG_00446, LGG_00447, LGG_00448, LGG_00449, ybjD, is16, is17, is18, is19, LGG_00455, pacL, is20, is21, napA, is22, is23, is24, eriC, is25, LGG_00465, [is26]
*	*	÷	NC_013198	1873063–1873847	1873905	59–843	40 [39]	[39] 40	[LGG_01843]–[LGG_01844]	[LGG_01843], [LGG_01844]
*	*	÷	NC_013198	2000909–2002399	2002399	1–1491	40 [39]	[38] 40	[is48]–is49	[is48], is49
*	*	÷	NC_013198	2574300	2574565	266	40 [34]	[39] 40	[LGG_02511]–[LGG_02512]	[LGG_02511], [LGG_02512]